原著論文2
[すべて] [A01の成果] [A02の成果] [A03の成果]
- Furuta. H.; Yoshida. T.; Natsume. A.; Hida. T.; Yatabe. Y., Inflammation Flare and Radiation Necrosis Around a Stereotactic Radiotherapy-Pretreated Brain Metastasis Site After Nivolumab Treatment, J Thorac Oncol, 13, 1975-1978, 2018
DOI :10.1016/j.jtho.2018.07.005
Tags: 夏目 A03 - Iwami. K.; Natsume. A.; Wakabayashi. T., Cytokine Therapy of Gliomas, Prog Neurol Surg, 32, 79-89, 2018
DOI: 10.1159/000469682
Tags: 夏目 A03 - Yamaguchi. J.; Kato. S.; Iwata. E.; Aoki. K.; Kabeya. R.; Natsume. A.; Wakabayashi. T., Pediatric-Type Follicular Lymphoma in the Dura: A Case Report and Literature Review, World Neurosurg, 115, 176-180, 2018
DOI: 10.1016/j.wneu.2018.04.053
Tags: 夏目 A03 - Choo. J.; Takeuchi. K.; Nagata. Y.; Ohka. F.; Kishida. Y.; Watanabe. T.; Satoh. Y.; Nagatani. T.; Kato. K.; Wakabayashi. T.; Natsume. A., Neuroendoscopic Cylinder Surgery and 5-Aminolevulinic Acid Photodynamic Diagnosis of Deep-Seated Intracranial Lesions, World Neurosurg, 116, e35-e41, 2018
DOI: 10.1016/j.wneu.2018.03.112
Tags: 夏目 A03 - Krishnan. H.; Rayes. J.; Miyashita. T.; Ishii. G.; Retzbach. EP.; Sheehan. SA.; Takemoto. A.; Chang. YW.; Yoneda. K.; Asai. J.; Jensen. L.; Chalise. L.; Natsume. A.; Goldberg. GS., Podoplanin: An emerging cancer biomarker and therapeutic target, Cancer Sci, 109, 1292-1299, 2018
DOI: 10.1111/cas.13580
Tags: 夏目 A03 - Wakabayashi. T.; Natsume. A.; Mizusawa. J.; Katayama. H.; Fukuda. H.; Sumi. M.; Nishikawa. R.; Narita. Y.; Muragaki. Y.; Maruyama. T.; Ito. T.; Beppu. T.; Nakamura. H.; Kayama. T.; Sato. S.; Nagane. M.; Mishima. K.; Nakasu. Y.; Kurisu. K.; Yamasaki. F.; Sugiyama. K.; Onishi. T.; Iwadate. Y.; Terasaki. M.; Kobayashi. H.; Matsumura. A.; Ishikawa. E.; Sasaki. H.; Mukasa. A.; Matsuo. T.; Hirano. H.; Kumabe. T.; Shinoura. N.; Hashimoto. N.; Aoki. T.; Asai. A.; Abe. T.; Yoshino. A.; Arakawa. Y.; Asano. K.; Yoshimoto. K.; Shibui. S.; Members of Japan Clinical Oncology Group Brain Tumor Study G, JCOG0911 INTEGRA study: a randomized screening phase II trial of interferonbeta plus temozolomide in comparison with temozolomide alone for newly diagnosed glioblastoma, J Neurooncol, 138, 627-636, 2018
DOI: 10.1007/s11060-018-2831-7
Tags: 夏目 A03 - Yamamichi. A.; Ohka. F.; Aoki. K.; Suzuki. H.; Kato. A.; Hirano. M.; Motomura. K.; Tanahashi. K.; Chalise. L.; Maeda. S.; Wakabayashi. T.; Kato. Y.; Natsume. A., Immunohistochemical ATRX expression is not a surrogate for 1p19q codeletion, Brain Tumor Pathol, 35(2), 106-113, 2018
DOI: 10.1007/s10014-018-03
Tags: 夏目 A03 - Hirano. M.; Ohka. F.; Maeda. S.; Chalise. L.; Yamamichi. A.; Aoki. K.; Kato. A.; Tanahashi. K.; Motomura. K.; Nishimura. Y.; Hara. M.; Shinjo. K.; Kondo. Y.; Wakabayashi. T.; Natsume. A., A novel high-sensitivity assay to detect a small fraction of mutant IDH1 using droplet digital PCR, Brain Tumor Pathol, 35(2), 97-105, 2018
DOI: 10.1007/s10014-018-0310-7
Tags: 夏目 A03 - Komuro. A.; Raja. E.; Iwata. C.; Soda. M.; Isogaya. K.; Yuki. K.; Ino. Y.; Morikawa. M.; Todo. T.; Aburatani. H.; Suzuki. H.; Ranjit. M.; Natsume. A.; Mukasa. A.; Saito. N.; Okada. H.; Mano. H.; Miyazono. K.; Koinuma. D., Identification of a novel fusion gene HMGA2-EGFR in glioblastoma, Int J Cancer, 142(8), 1627-1639, 2018
DOI: 10.1002/ijc.31179
Tags: 夏目 A03 - Aoki. K.; Nakamura. H.; Suzuki. H.; Matsuo. K.; Kataoka. K.; Shimamura. T.; Motomura. K.; Ohka. F.; Shiina. S.; Yamamoto. T.; Nagata. Y.; Yoshizato. T.; Mizoguchi. M.; Abe. T.; Momii. Y.; Muragaki. Y.; Watanabe. R.; Ito. I.; Sanada. M.; Yajima. H.; Morita. N.; Takeuchi. I.; Miyano. S.; Wakabayashi. T.; Ogawa. S.; Natsume. A.;, Prognostic relevance of genetic alterations in diffuse lower-grade gliomas, Neuro Oncol, 20(1), 66-77, 2018
DOI:10.1093/neuonc/nox132.
Tags: 夏目 A03 - Matsuura K., Synthetic Approaches to Construct Viral Capsid-like Spherical Nanomaterials, Chem. Commun., 2018, 54, 8944-8959. DOI: 10.1039/C8CC03844A Tags: 松浦 A02
- Inaba H.; Matsuura K., Peptide Nanomaterials Designed from Natural Supramolecular Systems, Chem. Rec., 2018, 19,5, 843-858
DOI: 10.1002/tcr.201800149
Tags: 松浦 A02 - Zhu. H.; Tamura. T.; Hamachi. I., Chemical Proteomics for Subcellular Proteome Analysis, Curr. Opin. Chem. Biol., 2018, 48:1-7,
DOI:10.1016/j.cbpa.2018.08.001.
Tags: 浜地 A01 - Kubota. R.; Nomura. W.; Iwasaka. T.; Ojima. K.; Kiyonaka. S.; Hamachi. I., A Chemogenetic Approach Using Ni(II) Complex-Agonist Conjugates Allows to Selectively Activate Class A G Protein-Coupled Receptors, ACS Central Science, 2018,4 (9), pp 1211–1221. DOI:10.1021/acscentsci.8b00390 Tags: 浜地 A01
- Zhao. C.; Song, H.; Scott. P.; Zhao, A.; Tateishi-Karimata. H.; Sugimoto. N.; Ren. J.; Qu. X., Mirror-image Dependence: Targeting Enantiomeric G-quadruplex DNA by 10 Pairs of Triplex Metallohelices, Angew. Chem. Int. Ed., 2018, 57(48), 15723-15727 DOI: 10.1002/ange.201809207 Tags: 杉本A02
- Teng. Y.; Tateishi-Karimata. H.; Tsuruoka. T.; Sugimoto. N., A Turn-On Detection of DNA Sequences by Means of Fluorescence of DNA-Templated Silver Nanoclusters via Unique Interactions of a Hydrated Ionic Liquid, N., Molecules, 23(11), 2889(2018) DOI: 10.3390/molecules23112889 Tags: 杉本A02
- Teng. Y.; Tateishi-Karimata. H.; Sugimoto.N. , C-rich sequence in a non-template DNA strand regulates structure change of G-quadruplex in a template strand during transcription, , Bull. Chem. Soc. Jpn., 92(3) 572-577(2019)
DOI: 10.1246/bcsj.20180298
Tags: 杉本A02 - Terakawa. M. S.; Lee. Y.-H.; Kinoshita. M.; Lin. Y. ; Sugiki. T.; Fukui. N.; Ikenoue. T.; Kawata. Y.; Goto. Y., Membrane-induced initial structure of α-synuclein control its amyloidogenesis on model membranes, BBA; Biomembranes, 1860(3), 757-766 (2018)
DOI: 10.1016/j.bbamem.2017.12.011
Tags: 河田A02 - Mizobata. T.; Kawata. Y.,The versatile mutational “repertoire” of E. coli GroEL, a multi-component chaperonin nanomachine, Biophysical Review, 10 (2), 631-640 (2018) Tags: 河田A02
- Azuma. Y.; Imai. H.; Kawaguchi. Y.; Nakase. I.; Kimura. H.; Futaki. S., Modular Redesign of a Cationic Lytic Peptide to Promote the Endosomal Escape of Biomacromolecules, Angew. Chem. Int. Ed. Eng., 57(39), 12771–12774 (2018)
DOI: 10.1002/anie.201807534
Tags: 二木A01 - Nishiyama. K.; Sugimura. K.; Kaji. N.; Tokeshi. M.; Baba. Y., Development of a Microdevice for Facile Analysis of Theophylline in Whole Blood by a Cloned Enzyme Donor Immunoassay Lab Chip, 2019, 19, 233-240.
DOI: 10.1039/c8lc01105b
Tags: 馬場 A03 - Sato. S.; Tsuchima. M.; Nakamura.H., Target-Protein-Selective Inactivation and Labelling Using Oxidative Catalyst. Org. Biomol. Chem. 16, 6168 – 6179 (2018). DOI: 10.1039/C8OB01484A
Tags: 中村 A01 - Lin. M.I.; Hiyama. A.; Kondo. K.; Nagata. T.; Katahira. M., Classification of fungal glucuronoyl esterases (FGEs), and characterization of two new FGEs from Ceriporiopsis subvermispora and Pleurotus eryngii (2018) Appl. Microbiol. Biotech., 102, 9635-9645.
DOI: 10.1007/s00253-018-9318-5.
Tags: 片平 A02 - Masoud. S.S.; Yamaoki. Y.; Ma. Y.; Marchand. A.; Winnerdy. F.R.; Gabelica. V.; Phan. A.T.; Katahira. M.; Nagasawa. K., Analysis of interaction between telomeric i-motif DNA and a cyclic tetraoxazole compound (2018) ChemBioChem., 19(21), 2268-2272.
DOI:10.1002/cbic.201800425
Tags: 片平 A02 - Ohara. Y.; Ozeki. Y.; Tateishi. Y.; Mashima. T.; Arisaka. F.; Tsunaka. Y.; Fujiwara. Y.; Nishiyama. A.; Yoshida. Y.; Kitadokoro. K.; Kobayashi. H.; Kaneko. Y.; Najagawa. I.; Maekura. R.; Yamamoto. S.; Katahira. M.; Matsumoto. S., Significance of a histone-like protein with its native structure for the diagnosis of asymptomatic tuberculosis (2018) PLoS ONE, 13, e0204160.
DOI:10.1371/journal.pone.0204160
Tags: 片平 A02 - Chen. Z.; Tonouchi. Y.; Matsumoto. K.; Saimura. M.; Atkin. R.; Nagata. T.; Katahira. M.; Hagiwara. R., Partially naked fluoride in solvate ionic liquids (2018) J. Phys. Chem. Lett., 9, 6662-6667.
DOI: 10.1021/acs.jpclett.8b03117
Tags: 片平 A02 - Tokunaga. Y.; Nagata. T.; Suetomi. T.; Oshiro. S.; Kondo. K.; Katahira. M.; Watanabe. T., NMR analysis of molecular interaction of lignin with amino acid residues of carbohydrate-binding module from Trichoderma reesei Cel7A. (2019) Sci. Rep.9:1977
DOI: 10.1038/s41598-018-38410-9
Tags: 片平 A02 - Wan. Osman, W. H.; Mikami. B.; Saka. N.; Kondo. K.; Nagata. T.; Katahira. M., Structure of a serine-type glutathione S-transferase of Ceriporiopsis subvermispora and identification of the enzymatically important non-canonical residues by functional mutagenesis (2019) Biochem. Biophys. Res. Commun.510(1):177-183.
DOI: 10.1016/j.bbrc.2019.01.076.
Tags: 片平 A02 - Sheng. Y.; Watanabe. H.; Maruyama. K.; Watanabe. C.; Okiyama. Y.; Honma. T.; Fukuzawa. K.; Tanaka. S., Towards Good Correlation between Fragment Molecular Orbital Interaction Energies and Experimental IC50 for Ligand Binding: A Case Study of p38 MAP Kinase, (2018) Comput. Struct. Biotech. J., 16, 421-434.
DOI: 10.1016/j.csbj.2018.10.003
Tags: 田中 A02 - Shimamura. K.; Shimojo. F.; Nakano. A.; Tanaka. S., Ab Initio Molecular Dynamics Study of Prebiotic Production Processes of Organic Compounds at Meteorite Impacts on Ocean, (2019)J. Comput. Chem., 40(2), 349-359.
DOI : 10.1002/jcc.25606
Tags: 田中 A02 -
Valgepea. K.; de Souza Pinto Lemgruber. R.; Abdalla. T.; Binos. S.; Takemori. N.; Takemori. A.; Tanaka. Y.; Tappel. R.; Köpke. M.; Simpson. SD.; Nielsen. LK.; Marcellin. E., H2 drives metabolic rearrangements in gas-fermenting Clostridium autoethanogenum. Biotechnol Biofuels. 2018 11:55. doi: 10.1186/s13068-018-1052-9.
Tags: 武森 A03 -
Suzuki. J.; Yamada. T.; Inoue. K.; Nabe. S.; Kuwahara. M.; Takemori. N.; Takemori. A.; Matsuda. S.; Kanoh. M.; Imai. Y.; Yasukawa. M.; Yamashita. M., The tumor suppressor menin prevents effector CD8 T-cell dysfunction by targeting mTORC1-dependent metabolic activation. Nat Commun. 2018 9(1):3296. doi: 10.1038/s41467-018-05854-6.
Tags: 武森 A03 -
Takahashi. S.; Chelobanov. B.; Kim. K. T.; Kim. B. H.; Stetsenko. D.; Sugimoto. N.,Design and Properties of Ligand-Conjugated Guanine Oligonucleotides for Recovery of Mutated G-Quadruplexes, Molecules, 23(12), 3228,2018
DOI: 10.3390/molecules23123228
Tags: 杉本A02 -
Takahashi. S.; Yamamoto. J. ; Kitamura. A.; Masataka. M. ; Sugimoto. N., Characterization of intracellular crowding environments with topology-based DNA quadruplex sensors, Anal. Chem., 91(4):2586-2590 (2019)
DOI: 10.1021/acs.analchem.8b04177
Tags: 杉本A02 - Ghosh. S.; Takahashi. S.; Endoh. T.; Tateishi-Karimata. H.; Hazra. S.; Sugimoto. N., Validation of the Nearest-neighbor Model for Watson–Crick Self-complementary DNA Duplexes in Molecular Crowding Condition, Nucleic Acids Res., (2019) 47, 7, 3284–3294, DOI:10.1093/nar/gkz071
Tags: 杉本A02 - Takahashi. S.; Okura. H.; Sugimoto. N., Bisubstrate function of RNA polymerases triggered by molecular crowding conditions, Biochemistry, 58, (8), pp 1081–1093 (2019)
DOI: 10.1021/acs.biochem.8b01204
Tags: 杉本A02 - Bhowmik. S.; Takahashi. S.; Sugimoto. N., Lighting up of thiazole orange on G-quadruplex DNA by high pressure, ACS Omega, 4(2), pp 4325–4329 (2019)
DOI: 10.1021/acsomega.8b03430
Tags: 杉本A02 - Endoh. T.; Ohyama. T.; Sugimoto. N., RNA-capturing microsphere particles (R-CAMPs) for optimization of functional aptamers, Small, 15 (2019) 1805062
DOI: 10.1002/smll.1805062
Tags: 杉本A02 -
大山達也, 建石寿枝, 田中成典, 杉本直己, テトラエチレングリコールで修飾されたグアニン四重鎖の安定性の分子動力学計算による解析, 日本核酸化学会誌, 2018, 2, 3–10
Tags: 杉本A02 -
Moriizumi Y.; Tabata K.V.; Watanabe R.; Doura T.; Kamiya M; Urano Y., Noji H., Hybrid cell reactor system from Escherichia coli protoplast cells and arrayed lipid bilayer chamber device. Sci Rep. 2018Aug 6;8(1):11757.
DOI:10.1038/s41598-018-30231-0
Tags:田端A03 -
Moriizumi Y.; Tabata KV.; Miyoshi D.; Noji H., Osmolyte-Enhanced Protein Synthesis Activity of a Reconstituted Translation System. ACS Synth Biol. 8(3), 557 – 5672019Feb 14.
DOI:10.1021/acssynbio.8b00513
Tags: 田端A03 -
Tabata KV.; Sogo. T.; Moriizumi. Y.; Noji H., Regeneration of Escherichia coli giant protoplasts to their original form. Life(Basel). 2019Mar 1;9(1). 24
DOI:10.3390/life9010024
Tags: 田端A03 -
Fujisawa, A.; Tamura, T.; Yasueda, Y.; Kuwata, K.; Hamachi, I., Chemical profiling of the endoplasmic reticulum proteome using designer labeling reagents. J. Am. Chem Soc. 2018, 140(49), 17060-17070, doi:10.1021/jacs.8b0860
Tag: 浜地A01 -
Tamura, T.; Hamachi, I., Chemistry for Covalent Modification of Endogenous/Native Proteins: From Test Tubes to Complex Biological Systems. J. Am. Chem. Soc., 2019, 141(7), 2782–2799, DOI:10.1021/jacs.8b11747
Tags: 浜地 A01 -
Sakamoto, S.; Kiyonaka, S.; Hamachi, I., Construction of ligand assay systems by protein-based semisynthetic biosensors. Curr. Opin. Chem. Biol., 2019, 50, 10–18, DOI:10.1016/j.cbpa.2019.02.011
Tags: 浜地 A01 -
Sakamoto. S.; Hamachi. I., Recent Progress in Chemical Modification of Proteins. Analytical Sciences. Anal. Sci., 2019, 35(1), 5–27, DOI:10.2116/analsci.18R003
Tags: 浜地 A01 -
Sakai. R.; Iguchi. H.; Maruyama. T., Quantification of azide groups on a material surface and a biomolecule using a clickable and cleavable fluorescent compound. RSC Adv. 9, 4621-4625 (2019). DOI : 10.1039/c8ra09421g
Tags: 丸山A01 - Hara. M.; Kitahata. S.; Nishimori. K.; Miyahara. K.; Tokuda. K.; Nishino. T.; Maruyama. T., Surface-functionalization of isotactic polypropylene via dip-coating with a methacrylate-based terpolymer containing perfluoroalkyl groups and poly(ethylene glycol). Polymer J. 51, 489-499 (2019).
DOI : 10.1038/s41428-018-0164-1
Tags: 丸山A01 - Suzuki. R.; Sakakura. M.; Mori. M.; Fujii. M.; Akashi. S.; Takahashi. H., Methyl-selective isotope labeling using α-ketoisovalerate for the yeast Pichia pastoris recombinant protein expression system. J. Biomol. NMR, 71(4), 213-223 (2018).
DOI : 10.1007/s10858-018-0192-3.
Tags: 明石A02 - Hyodo. F.; Sho. T.; Basudev. M.; Fujita. K.; Tachibana. Y.; Akashi. S.; Mano. M.; Hishikawa. Y.; Matsuo. M.; Nakaji. T.; Ueno. T., Photo-induced in Vivo MRI Imaging with Rapid CO Release from an MnCO-Protein Needle Composite. Chemistry. Eur. J., 24 (45), 11578-11583 (2018).
DOI: 10.1002/chem.201802445
Tags: 明石A02 - Tamura. R.; Oi. R.; Akashi. S.; Kaneko. M.K.; Kato. Y.; Nogi. T., Application of the NZ-1 Fab as a crystallization chaperone for PA tag-inserted target proteins. Protein Sci. 28(4), 823-836 (2019). DOI : 10.1002/pro.3580
Tags: 明石A02 - Hall. D.; Kinjo. A.; Goto. Y., A new look at an old view of denaturant induced protein unfolding. Anal. Biochem., 2018, 542(1), 40-57 DOI: 10.1016/j.ab.2017.11.011.
Tags. 後藤 A02 - Adachi. M.; Noji, M.; So. M.; Sasahara. K.; Kardos. J.; Naiki. H.; Goto. Y., Aggregation-phase diagrams of β2-microglobulin reveal temperature and salt effects on competitive formation of amyloids versus amorphous aggregates. J. Biol. Chem., 2018, 293, 14775-14785. DOI: 10.1074/jbc.RA118.004683.
Tags. 後藤 A02 - Noji. M.; So. M.; Yamaguchi. K.; Hojo. H.; Onda. .M.; Akazawa-Ogawa. Y.; Hagihara. Y.; Goto. Y., Heat-induced aggregation of hen ovalbumin suggests a key factor responsible for serpin polymerization. Biochemistry, 2018, 57(37), 5415-5426.
DOI: 10.1021/acs.biochem.8b00619.
Tags. 後藤 A02 - Kakuda. K.; Ikenaka. K.; Araki. K.; So. M.; Aguirre. C.; Kajiyama. Y.; Konaka. K.; Noi. K.; Baba. K.; Tsuda. H.; Nagano. S.; Ohmichi. T.; Nagai. Y.; Tokuda. T.; El-Agnaf. O.; Ogi. H.; Goto. Y.; Mochizuki. H., Ultrasonication-based rapid amplification of α-synuclein aggregates in cerebrospinal fluid. Scientific Reports, 2019, 9, 6001 DOI: 10.1038/s41598-019-42399-0.
Tags. 後藤 A02 - Masuda, T.; Baba, K.; Nomura, T.; Tsujita, K.; Murayama, T.; Itoh, T.; Takatani-Nakase, T.; Sokabe, M.; Inagaki, N.; Futaki, S. An influenza-derived membrane tension-modulating peptide regulates cell movement and morphology via actin remodeling. Commun. Biol. 2, 243 (2019)
DOI: 10.1038/s42003-019-0486-3
Tags: 二木 A01 - Nakasone, Y.; Kikukawa, K.; Masuda, S.; Terazima, M. Time-Resolved Study of Interprotein Signaling Process of a Blue Light Sensor PapB-PapA Complex, J Phys Chem B, 2019, 123(15), 3210-3218. DOI: 10.1021/acs.jpcb.9b00196. Tags: 中曽根 A02
- Hamajima W.; Fujimura A.; Fujiwara Y.; Yamatsugu K.; Kawashima S. A.; Kanai M., Site-Selective Synthetic Acylation of a Target Protein in Living Cells Promoted by a Chemical Catalyst/Donor System, ACS Chem. Biol., 2019, 14(6), 1102-1109.
DOI: 10.1021/acschembio.9b00102
Tags: 山次 A01 - Ito K.; Tatsumi T.; Takahashi K.; Shimizu Y.; Yamatsugu K.; Kanai M., A Stable and Cleavable O-Linked Spacer for Drug Delivery Systems, Chem. Pharm. Bull., 2020,68 (3),212-215
DOI: https://doi.org/10.1248/cpb.c19-00376
Tags: 山次 A01 - Terai. T.; Anzai. H.; Nemoto. N., Selection of Peptides that Associate with Dye-Conjugated Solid Surfaces in a pH-Dependent Manner Using cDNA Display. ACS Omega, 2019, 4, 7378-7384. DOI: 10.1021/acsomega.9b00631
Tags: 寺井 A01 - Anzai, H.; Terai, T.; Jayathilake, C.; Suzuki, T.; Nemoto, N., A novel immuno-PCR method using cDNA display. Anal. Biochem., 2019, 578, 1-6. DOI: 10.1016/j.ab.2019.04.017
Tags: 寺井 A01 - Zhang, C., Yamaguchi1, Y., So, M., Sasahara, K., Ito, T., Yamamoto, S., Narita, I., Kardos, J., Naiki, H., and *Goto, Y. Possible mechanisms of polyphosphate-induced amyloid fibril formation of β2-microglobulin. Proc. Natl. Acad. Sci. USA
DOI: 10.1073/pnas.1819813116
Tags: 後藤 A02 -
Hattori, Y.; Shimada, T.; Yasui, T.; Kaji, N.; Baba, Y., Micro- and Nanopillar Chips for Continuous Separation of Extracellular Vesicles. Anal. Chem. 2019,91(10), 6514-6521. DOI:10.1021/acs.analchem.8b05538
Tags: 加地A03 - Zeid. A. M.; Kaji. N.; Nasr. J. J. M.; Belal. F. ; Walash. M. I.; Baba. Y., Determination of baclofen and vigabatrin by microchip electrophoresis with fluorescence detection: application of field-enhanced sample stacking and dynamic pH junction, New Journal of Chemistry, 42, 12, 9965-9974, 2018, DOI :10.1039/c8nj00829a
Tags:馬場A03 - Yukawa. H.; Suzuki. K.; Aoki. K.; Arimoto. T.; Yasui. T.; Kaji. N.; Ishikawa. T.; Ochiya. T.; Baba. Y., Imaging of angiogenesis of human umbilical vein endothelial cells by uptake of exosomes secreted from hepatocellular carcinoma cells, Scientific Reports, 8, 2018,6765
DOI :10.1038/s41598-018-24563-0.
Tags:馬場A03 - Yukawa. H.; Y. Baba., In Vivo Imaging Technology of Transplanted Stem Cells Using Quantum Dots for Regenerative Medicine, Analytical Sciences, 34, 5, 525-532, 2018,
DOI :10.2116/analsci.17R005.
Tags:馬場A03 - Yasaki. H.; Yasui. T.; Yanagida. T.; Kaji. N.; Kanai. M.; Nagashima. K.; Kawai. T.; Baba. Y., A real-time simultaneous measurement on a microfluidic device for individual bacteria discrimination, Sensors and Actuators B, 260, 746-752, 2018,
DOI :10.1016/j.snb.2018.01.079.
Tags:馬場A03 - Yasaki. H.; Yasui. T.; Yanagida. T.; Kaji. N.; Kanai. M.; Nagashima. K.; Kawai. T.; Baba. Y., Effect of Channel Geometry on Ionic Current Signal of Bridge Circuit Based Microfluidic Channel, Chem. Lett., 47, 350-353, 2018, DOI :10.1246/cl.171139.
Tags:馬場A03 - Watanabe. H.; Tsuchiya. T.; Shimoyama. K.; Shimizu. A.; Akita.S.; Yukawa. H.; Baba. Y.; Nagayasu. T., Adipose-derived mesenchymal stem cells attenuate rejection in a rat lung transplantation model, Journal of Surgical Research, 227, 17-27, 2018,
DOI :10.1016/j.jss.2018.01.016.
Tags:馬場A03 - SHIMADA. T.; YASAKI. H.; YASUI. T.; YANAGIDA. T.; KAJI. N.; KANAI M.; NAGASHIMA. K.; KAWAI. T.; BABA. Y., PM2.5 Particle Detection in a Microfluidic Device by Using Ionic Current Sensing, Anal. Sci., 34, 12, 1347-1349, 2018, DOI :10.2116/analsci.18C018.
Tags:馬場A03 - Shimada. T.; Yasui. T.; Yokoyama. A.; Goda. T.; Hara. M.; Yanagida. T.; Kaji. N.; Kanai. M.; Nagashima. K.; Miyahara. Y.; Kawai. T.; Baba. Y., Biomolecular recognition on nanowire surfaces modified by the self-assembled monolayer, Lab on a Chip, 18, 21, 3225-3229, 2018, DOI :10.1039/c8lc00438b.
Tags:馬場A03 - Pillai. S. S.; Yukawa. H.; Onoshima. D.; Biju. V. ; Baba. Y., Quantum Dot-Peptide Nanoassembly on Mesoporous Silica Nanoparticle for Biosensing, Nano Hybrids and Composites, 19, 55-72, 2018, DOI :10.4028/www.scientific.net/NHC.19.55.
Tags:馬場A03 - Okumura. H.; Nanizawa. E.; Nakanishi. A.; Yukawa. H.; Hashita. T.; Iwao. T.; Baba. Y.; Ishikawa. T.; Matsunaga. T., Effective Transplantation of 2D and 3D Cultured Hepatocyte Spheroids Confirmed by Quantum Dot Imaging, Advanced Biosystems, 2, 8, 2018,
DOI :10.1002/adbi.201800137.
Tags:馬場A03 - Kihara. N.; Odaka. H.; Kuboyama. D.; Onoshima. D.; Ishikawa. K.; Baba. Y.; Hori. M., Facile fabrication of a poly(ethylene terephthalate) (PET) membrane filter with precise arrangement of through-holes, Japanese Journal of Applied Physics (JJAP) 57, 037001, 2018, DOI :10.7567/jjap.57.037001.
Tags:馬場A03 - Kihara. N.; Kuboyama. D.; Onoshima. D.; Ishikawa. K.; Tanaka. H.; Ozawa. N.; Hase. T.; Koguchi. R.; Yukawa. H.; Odaka. H.; Hasegawa. Y.; Baba. Y.; Hori. M., Low-autofluorescence fluoropolymer membrane filters for cell filtration, Japanese Journal of Applied Physics, 57, 6S2, 2018, DOI :10.7567/jjap.57.06jf03.
Tags:馬場A03 - Yasaki. H.; Shimada. T.; Yasui. T.; Yanagida. T.; Kaji. N.; Kanai. M.; Nagashima. K.; Kawai. T.; Baba. Y., Robust Ionic Current Sensor for Bacterial Cell Size Detection, ACS Sensors, 3, 574–579, 2018,
DOI :10.1021/acssensors.8b00045.
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Sato. S.; Yoshida. M.; Hatano. K.; Matsumura. M.; Nakamura. H., N’-Acyl-N-methylphenylenediamine as a Novel Proximity Labeling Agent for Signal Amplification in Immunohistochemisty. Bioorg. Med. Chem., 27(6), 1110-1118 (2019) DOI:10.1016/j.bmc.2019.01.036.
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Tags: 中村 A01 - Asawa. Y.; Katsuragi. K.; Sato. A.; Yoshimori. A.; Tanuma. S.; Nakamura. H., Structure-based drug design of novel carborane-containing nicotinamide phosphoribosyltransferase inhibitors. Bioorg. Med. Chem. 27(13),2832-2844 (2019). DOI:10.1016/j.bmc.2019.05.013.
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Tags: 内田 A03 - Prasad. B.; Achour. B.; Artursson. P.; Hop. CE.; Lai. Y.; Smith. PC.; Barber. J.; Wisniewski. JR.; Spellman. D.; Uchida. Y.; Zientek. M.; Unadkat. JD.; Rostami-Hodjegan. A., Towards a Consensus on Applying Quantitative LC-MS/MS Proteomics in Translational Pharmacology Research: A White Paper. Clin Pharmacol Ther. 2019 Sep;106(3):525-543
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In situ condensation of an anti-cancer drug into fibrin gel enabling effective inhibition of tumor cell growth Chem Commun (Camb), 55, 11679-11682 (2019)
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Regulation of spatiotemporal patterning in artificial cells by a defined protein expression system
Chemical Science, 2019, 10, 11064-11072
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- Tokuda, E.; Takei, Y.; Ohara, S.; Fujiwara, N.; Hozumi, I.; Furukawa, Y. Wild-type Cu/Zn-superoxide dismutase is misfolded in cerebrospinal fluid of sporadic amyotrophic lateral sclerosis. Molecular Neurodegeneration, 2019, 14, 42
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Takaramoto. S.; Nakasone. Y.; Sadakane. K.; Maruta. S.; Terazima. M.,
Spiropyran labeling for sensitive probing of protein diffusion by the transient grating method.
Chemical Physics Letters. Volume 739, January 2020, 136919
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Photoreaction Dynamics of Full-Length Phototropin from Chlamydomonas Reinhardtii
J. Phys. Chem. B. 2019, 123, 51, 10939-10950
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ACS Nano, 2019, 13, 2262–2273 DOI: 10.1021/acsnano.8b08959
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Anal. Chem., 2019, 91, 2019, 91, 10, 6514-6521.
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ACS Nano, 2019, 13, 7, 8155-8168.
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Anal. Chem, 2019, 91, 12890-12899.
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DISCRIMINATING DRUG-RESISTANT BACTERIA USING AI ANALYSIS ON FINE CURRENT CHANGES FROM INNER ION LEAKAGES
Micro Total Analysis Systems 2019, 852-853 (2019).
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ANALYZING PEPTIDE ADSORPTION STATES VIA NANOWIRE-EMPLOYED INFRARED SPECTROMETRY
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Bio-protocol, 2019, 9, e3457 DOI: 10.21769/BioProtoc.3457
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Ichihashi. Y.; Komatsu. T.; Kyo. E.; Matsuzaki. H.; Hata. K.; Watanabe. T.; Ueno. T.; Hanaoka. K.; Urano. Y.,
Separation-Based Enzymomics Assay for the Discovery of Altered Peptide-Metabolizing Enzymatic Activities in Biosamples
Anal. Chem., 2019, 91, 11497-11501 doi:10.1021/acs.analchem.9b03016
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Toru Komatsu, and Yasuteru Urano
Chemical Toolbox for “Live” Biochemistry to Understand Enzymatic Functions in Living Systems, J. Biochem., 2020, 167 (2), 139–149
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J. Am. Chem. Soc., 2020, 142, 1, 21-26 DOI :10.1021/jacs.9b08698
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Evaluation of ring-5 structures of guaiacyl lignin in Ginko biloba L. using solid- and liquid-state 13C NMR difference spectroscopy
Holzforschung, 73, 1083-1092 DOI:org/10.1515/hf-2019-0011
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Visualization of Sampling and Ionization Processes in Scanning Probe Electrospray Ionization Mass Spectrometry
Mass Spectrometry (Tokyo), 7(2), S0078, 2018. DOI: 10.5702/massspectrometry.S0078
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Teng. Y.; Tateishi-Karimata. H.; Ohyama. T.; Sugimoto. N., Effect of Potassium Concentration on Triplex Stability under Molecular Crowding Conditions
Molecules, 25, 387 (2020)
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Tateishi-Karimata. H.; Ohyama. T.; Muraoka. T.; Tanaka. S.; Kinbara. K.; Sugimoto. N., New Modified Deoxythymine with Dibranched Tetraethylene Glycol Stabilizes G-Quadruplex Structures
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H. Tateishi-Karimata and N. Sugimoto
Chemical biology of non-canonical structures of nucleic acids for therapeutic applications, Chem. Commun., 2020, 56, 2379-2390
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Araki, K.; Yagi, N.; Aoyama, K.; Choong, C.; Hayakawa H.; Fujimura, H.; Nagai, Y.; Goto, Y.; Mochizuki, H., Parkinson’s disease is a type of amyloidosis featuring accumulation of amyloid fibrils of α-synuclein, Proc. Natl. Acad. Sci. USA, 116, 17963-17969 (2019).
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Sasahara, K.; Yamaguchi, K.; So, M.; Goto, Y., Polyphosphates diminish solubility of a globular protein and thereby promote amyloid aggregation, J. Biol. Chem., 294, 15318-15329 (2019).
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Noji, M.; Sasahara, K.; Yamaguchi, K.; So, M.; Sakurai, K.; Kardos, J.; Naiki, H.; Goto, Y., Heating during agitation of β2-microglobulin reveals that supersaturation breakdown is required for amyloid fibril formation at neutral pH, J. Biol. Chem., 294, 15826-15835 (2019).
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Muta, H.; So, M.; Sakurai, K.; Kardos, J.; Naiki, H.; Goto, Y., Amyloid formation under complicated conditions in which β2-microglobulin coexists with its proteolytic fragments, Biochemistry, 58, 4925-4934 (2019).
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Taricska, N.; Horváth, D.; Menyhárd, D. K.; Ákontz-Kiss, H.; Noji, M.; So, M.; Goto, Y.; Fujiwara, T.; Perczel, A., The route from the folded to the amyloid state: exploring the potential energy surface of a drug-like miniprotein, Chem. European J., 26, 1968-1978 (2020).
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Furukawa, K.*; Aguirre, C.*; So, M.*; Sasahara, K.; Miyanoiri, Y.; Sakurai, K.; Yamaguchi, K.; Ikenaka, K.; Mochizuki, H.; Kardos, J.; Kawata, Y.; Goto, Y. (*equal contribution), Isoelectric point-amyloid formation of α-synuclein extends the solubility and supersaturation-limited mechanism, Curr. Res. Struct. Biol., 10, 35-44 (2020).
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Sawada. M.; Yamaguchi. K.; Hirano. M.; Noji. M.; So. M.; Otzen. D.; Kawata. Y.; Goto. Y., Amyloid formation of alpha-synuclein based on the solubility- and supersaturation-dependent mechanism, Langmuir, (2020), 36(17):4671-4681.
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Tokunaga. Y.; Takeuchi. K.; Okude. J.; Ori. K; Torizawa. T; Shimada. I;, Structural Fingerprints of an Intact Monoclonal Antibody Acquired under Formulated Storage Conditions via 15N Direct Detection Nuclear Magnetic Resonance, J Med Chem. 63, 5360-5366. (2020)
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Tags: 中村A01 - Sato. S.; Matsumura. M.; Kadonosono. T.; Abe. S.; Ueno. T.; Ueda. H.; Nakamura. H.;, Site-Selective Protein Chemical Modification in Exposed Tyrosine Residues Using Tyrosine Click Reaction, Bioconjugate Chem. 31, 1417−1424 (2020)
DOI: 10.1021/acs.bioconjchem.0c00120
Tags: 中村A01 - Sato. S.; Nakane. K.; Nakamura. H.;, Laccase-Catalysed Tyrosine Click Reaction, Org. Biomol. Chem. 18, 3664-3668 (2020)
DOI: 10.1039/d0ob00650e.
Tags: 中村A01 - Morita. T.; Fuse. S.; Nakamura. H.;, Novel Photochemical Conversion of Isoxazoles to 5-Hydroxyimidazolines: Possible Protein Labeling at Lysine Residues, Org. Lett. 22, 3460-3463 (2020)
DOI: 10.1021/acs.orglett.0c00910
Tags: 中村A01 - Inoue. M.; Saito. R.; Kakita. A.; Tainaka. K., Rapid Chemical Clearing of White Matter in the Post-Mortem Human Brain by 1,2-hexanediol Delipidation, Bioorg. Med. Chem. Lett. 29(15), 1886-1890 (2019) DOI: 10.1016/j.bmcl.2019.05.049 Tags: 田井中A01
- Susaki. E.A.; Shimizu. C.; Kuno. A.; Tainaka. K.; Li. X.; Nishi. K.; Morishima. K.; Ono. H.; Ode. K.L.; Saeki. Y.; Miyamichi. K.; Isa. K.; Yokoyama. C.; Kitaura. H.; Ikemura. M.; Ushiku. T.; Shimizu. Y.; Saito. T.; Saido. T.C.; Fukayama. M.; Onoe. H.; Touhara. K.; Isa. T.; Kakita. A.; Shibayama. M.; Ueda. H.R., Versatile whole-organ/body staining and imaging based on electrolyte-gel properties of biological tissues, Nat. Commun. 11(1), 1982 (2020) DOI: 10.1038/s41467-020-15906-5. Tags: 田井中A01
- Saito. N.; Tainaka. K.; Macpherson. T.; Hikida. T.; Yamaguchi. S.; Sasaoka. T., Neurotransmission Through Dopamine D1 Receptors Is Required for Aversive Memory Formation and Arc Activation in the Cerebral Cortex, Neurosci. Res. (2020) 156, 58-65
DOI: 10.1016/j.neures.2020.04.006. Tags: 田井中A01 - Hatanaka, W.; Takeuchi, H.; Koga, M.; Ryujin, T.; Kishimura, A.; Katayama, Y.; Tsukiji, S.; Mori, T., Synthesis of transmembrane molecules by click chemistry, Chemistry Letters, 2019, 48, 433–436. DOI: 10.1246/cl.190009
Tags: 築地A01 - Nakamura, A.; Katahira, R.; Sawada, S.; Shinoda, E.; Kuwata, K.; Yoshii, T.; Tsukiji, S., Chemogenetic control of protein anchoring to endomembranes in living cells with lipid-tethered small molecules, Biochemistry, 2020, 59, 205–211. DOI: 10.1021/acs.biochem.9b00807.
Tags: 築地A01 - Sumito, N.; Koeda, S.; Umezawa, N.; Inoue, Y.; Tsukiji, S.; Higuchi, T.; Mizuno, T., Development of cell-penetration PG-surfactants and its application in external peptide delivery to cytosol, Bioconjugate Chemistry, 2020, 31, 821–833. DOI: 10.1021/acs.bioconjchem.9b00877.
Tags: 築地A01 - Nakamura, A.; Oki, C.; Kato, K.; Fujinuma, S.; Maryu, G.; Kuwata, K.; Yoshii, T.; Matsuda, M.; Aoki, K.; Tsukiji, S., Engineering orthogonal, plasma membrane-specific SLIPT systems for multiplexed chemical control of signaling pathways in living single cells, ACS Chemical Biology, 2020, 15, 1004–1015. DOI: 10.1021/acschembio.0c00024.
Tags: 築地A01 - Nakamura, A.; Oki, C.; Sawada, S.; Yoshii, T.; Kuwata, K.; Rudd, A. K.; Devaraj, N. K.; Noma, K.; Tsukiji, S., Designer palmitoylation motif-based self-localizing ligand for sustained control of protein localization in living cells and Caenorhabditis elegans, ACS Chemical Biology, 2020, 15, 837–843. DOI: 10.1021/acschembio.0c00014.
Tags: 築地A01 - Takaoka, Y.; Miyagawa, S.; Nakamura, A.; Egoshi, S.; Tsukiji, S.; Ueda, M., Hoechst-tagged fluorescein diacetate for the fluorescence imaging-based assessment of stomatal dynamics in Arabidopsis thaliana, Scientific Reports, 2020, 10, 5333. DOI: https://doi.org/10.1038/s41598-020-62239-w.
Tags: 築地A01 - Suzuki, S.; Ikuta, M.; Yoshii, T.; Nakamura, A.; Kuwata, K.; Tsukiji, S., Golgi recruitment assay for visualizing small-molecule ligand–target engagement in cells, Chemical Communications, Advance Article. DOI: 10.1039/d0cc02020f.
Tags: 築地A01 -
Tamura, T.; Takato, M.; Shiono, K.; Hamachi, I. Development of a Photoactivatable Proximity Labeling Method for the Identification of Nuclear Proteins. Chemistry Letters, 2020, 49, 145-148 doi:10.1246/cl.190804
Tags: 浜地 A01 -
Kubota, R.; Nakamura, K.; Torigoe, S.; Hamachi, I. The Power of Confocal Laser Scanning Microscopy in Supramolecular Chemistry: In situ Real‐time Imaging of Stimuli‐Responsive Multicomponent Supramolecular Hydrogels., ChemistryOPEN, 2020, 9, 67-79 doi:10.1002/open.201900328
Tags: 浜地 A01 - Endoh. T.; Sugimoto. N., Conformational Dynamics of the RNA G-Quadruplex and its Effect on Translation Efficiency Molecules, 24, 1613 (2019). Tags:杉本 A02
- Takahashi. S.; Sugimoto. N., Quantitative Analysis of Stall of Replicating DNA Polymerase by G-Quadruplex Formation Methods Mol. Biol. (Springer), 2035, 257-274 (2019). Tags:杉本 A02
- S. Ghosh, S. Takahashi, T. Ohyama, T. Endoh, H. Tateishi-Karimata, and N. Sugimoto
Universal Nearest-Neighbor Parameters for DNA Duplex Stability under Molecular Crowding Conditions
Proc. Natl. Acad. Sci. USA.(2020),117(25):14194-14201
DOI:10.1073/pnas.1920886117.
Tags:杉本 A02 - S. Matsumoto, H. Tateishi-Karimata, S. Takahashi, T. Ohyama, and N. Sugimoto
Effect of molecular crowding on the stability of RNA G-quadruplexes with various numbers of quartets and lengths of loops
Biochemistry, 59(28), 2640–2649 (2020)
DOI:10.1021/acs.biochem.0c00346 Tags:杉本 A02 - Fujiwara M., Tsukahara R., Sera Y., Yukawa H., Baba Y., Shikata S., Hashimoto H., Monitoring spin coherence of single nitrogen-vacancy centers in nanodiamonds during pH changes in aqueous buffer solutions, Rsc Advances, 9(22), 12606-12614,
Tags: 馬場 A03 - Akihiro Y., Nagashima K., Yasui T., Baba Y., Yanagida T., Water-Organic Cosolvent Effect on Nucleation of Solution-Synthesized ZnO Nanowires, Acs Omega, 4(5), 8299-8304,
Tags: 馬場 A03 - Toda, M., Yukawa, H., Yamada, J., Ueno, M., Kinoshita, S., Baba, Y., Hamuro, J., In Vivo Fluorescence Visualization of Anterior Chamber Injected Human Corneal Endothelial Cells Labeled With Quantum Dots, Investigative Ophthalmology & Visual Science, 60(12), 4008-4020,
Tags: 馬場 A03 - Sano M., Kaji N., Rowat A. C., Yasaki H., Shao L., Odaka H., Yasui T., Higashiyama T., Baba Y., Microfluidic Mechanotyping of a Single Cell with Two Consecutive Constrictions of Different Sizes and an Electrical Detection System, Analytical Chemistry, 91(20), 12890-12899,
Tags: 馬場 A03 - Sakai D., Nagashima K., Yasui T., Baba Y., Yanagida T., Substantial Narrowing on the Width of Concentration Window” of Hydrothermal ZnO Nanowires via Ammonia Addition, Scientific Reports, 9, Article number: 14160, (2019)
Tags: 馬場 A03 - Ramos K. C., Nishiyama K. Maeki M., Ishida A., Tani H., Kasama T., Baba, Y.,Tokeshi M., Rapid Sensitive and Selective Detection of H5 Hemagglutinin from Avian Influenza Virus Using an Immunowall Device, Acs Omega, 4(15), 16683-16688,
Tags: 馬場 A03 - Xixi Zhao, Kazuki Nagashima, Guozhu Zhang, Takuro Hosomi, Takao Yasui, Yoshinobu Baba, Takeshi Yanagida, Synthesis of Monodispersely Sized ZnO Nanowires from Randomly Sized Seeds, Nano Lett., 20, 599-605
Tags: 馬場 A03 - Kitase Y., Sato Y., Ueda K., Baba Y., Hayakawa M., A Novel Treatment with Stem Cells from Human Exfoliated Deciduous Teeth for Hypoxic-Ischemic Encephalopathy in Neonatal Rats, Stem Cells and Development, 29(2), 63-74
Tags: 馬場 A03 - Y. Isobe, K. Sato, Y. Nishinaga, K. Takahashi, S. Taki, H. Yasui, Y. Baba, Y. Hasegawa, Near Infrared Photoimmunotherapy Targeting DLL3 For Small Cell Lung Cancer, EBioMedicine, 52, 102632
Tags: 馬場 A03 - Suzuki T., Kaji N., Yasaki H., Yasui T., Baba Y., Mechanical Low-Pass Filtering of Cells for Detection of Circulating Tumor Cells in Whole Blood, Analytical Chemistry, 92(3), 2483-2491,
Tags: 馬場 A03 - T. Kameyama, H. Yamaguchi, T. Yamamoto, T. Mizumaki, H. Yukawa, Y. Baba, T. Torimoto, Tailored Photoluminescence Properties of Ag(In,Ga)Se2 Quantum Dots for Near-Infrared in vivo Imaging, ACS Applied Nano Materials, 2020, 3, 4, 3275–3287
Tags: 馬場 A03 - Y. Miura, H. Yukawa, Y. Baba, Y. Tabata, Visualization of human iPS cells-derived 3D cartilage tissue by gelatin nanospheres, Tissue Engineering C, Methods, 06 Mar, 2020, 26(5):244-252,
Tags: 馬場 A03 - Zhang G., Wang C., Mizukami W., Yasui T., Aoki Y., Baba Y., Yanagida T., Monovalent Sulfur Oxoanions Enable Millimeter-Long Single Crystalline hWO3 Nanowire Synthesis, Nanoscale, Nanoscale, 2020,12, 9058-9066
Tags: 馬場 A03 - Daisuke Onoshima, Kentaro Uchida, Hiroshi Yukawa, Kenji Ishikawa, Masaru Hori, Yoshinobu Baba , Single-cell microscopic raman spectroscopy for rapid microbial detection, Micro Total Analysis Systems 2019, 1374-1375
Tags: 馬場 A03 - Munetoyo Toda,Hiroshi Yukawa, Jun Yamada, Morio Ueno, Shigeru Kinoshita, Junji Hamuro, In vivo fluorescence visualization of anterior chamber injected human corneal endothelial cells labeled with quantum dots, Investigative Ophthalmology & Visual Science, 60(12), 4008-4020
Tags: 馬場 A03 - Hiroshi Yukawa, Masazumi Fujiwara, Kaori Kobayashi, Yuka Kumon, Kazu Miyaji, Yushi Nishimura, Keisuke Oshimi, Yumi Umehara, Yoshio Teki, Takayuki Iwasaki, Mutsuko Hatano, Hideki Hashimoto and Yoshinobu Baba, Quantum thermometric sensing and analysis system using fluorescent nanodiamonds for the evaluation of the living stem cell function according to intracellular temperature, Nanoscale Advances, 2020, 2, 1859-1868.
Tags: 馬場 A03 - Yuko Nishinaga, Kazuhide Sato, Hirotoshi Yasui, Shunichi Taki, Kazuomi Takahashi, Misae Shimizu, Rena Endo, Chiaki Koike, Noriko Kuramoto, Shota Nakamura, Takayuki Fukui, Hiroshi Yukawa, Yoshinobu Baba, Mika K. Kaneko, Toyofumi F. Chen-Yoshikawa, Hisataka Kobayashi, Yukinari Kato, Yoshinori Hasegawa, Targeted Phototherapy for Malignant Pleural Mesothelioma: Near Infrared Photoimmunotherapy Targeting Podoplanin, Cells, 2020, Apr 20;9(4):1019
Tags: 馬場 A03 - H. Suzuki, K. Fujiyoshi, N. Kaji, M. Tokeshi, Y. Baba, Observation of ethanol-induced condensation and decondensation processes at a single DNA molecular level in microfluidic devices equipped with a rapid solution exchange system, Anal. Chem., 2020, 92, 13, 9132–9137.
Tags: 馬場 A03 - Taisuke Shimada, Takao Yasui, Akihiro Yonese, Takeshi Yanagida, Noritada Kaji, Masaki Kanai, Kazuki Nagashima, Tomoji Kawai, Yoshinobu Baba, Mechanical Rupture-based Antibacterial and Cell-compatible Nanowire Structures Formed by Hydrothermal Synthesis, Micromachies, 2020, 11(6):610 · June 2020
Tags: 馬場 A03 - Kubota. R.; Makuta. M.; Suzuki. R.; Ichikawa. M.; Tanaka. M.; Hamachi. I., Force generation by a propagating wave of supramolecular nano fibers, Nature Communications, 2020, 11:3541.
Tags: 浜地A01
- Dornheim, T.; Sjostrom, T.; Tanaka, S.; Vorberger, J., Strongly Coupled Electron Liquid: Ab Initio Path Integral Monte Carlo Simulations and Dielectric Theories, Phys. Rev. B 101 (2020) 045129. Tags: 田中 A02
- Umegaki, T.; Tanaka, S., Nanoscale Quantum Thermal Conductance at Water Interface: Green’s Function Approach Based on One-Dimensional Phonon Model,
Molecules 25 (2020) 1185. Tags: 田中 A02 - Suzuki, Y.; Watanabe, H.; Okiyama, Y.; Ebina, K.; Tanaka, S., Comparative Study on Model Parameter Evaluations for the Energy Transfer Dynamics in Fenna-Matthews-Olson Complex, Chem. Phys. 539 (2020) 110903. Tags: 田中 A02
- Tanaka, S.; Watanabe, C.; Honma, T.; Fukuzawa, K.; Ohishi, K.; Maruyama, T., Identification of Correlated Inter-Residue Interactions in Protein Complex Based on the Fragment Molecular Orbital Method, J. Mol. Graph. Model. 100 (2020) 107650. Tags: 田中 A02
- Tanaka, S.; Shimamura, K., Temperature Relaxation in Binary Hard-Sphere Mixture System: Molecular Dynamics and Kinetic Theory Study, J. Chem. Phys. 153 (2020) 034114. Tags: 田中 A02
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Takemori, A.; Butcher, DS.: Harman, VM.; Brownridge, P.; Shima, K.; Higo, D.; Ishizak,i J.; Hasegawa, H.; Suzuki, J.; Yamashita, M.; Loo, JA.; Loo, RRO.; Beynon, RJ.; Anderson, LC.; Takemori, N., PEPPI-MS: Polyacrylamide-Gel-Based Prefractionation for Analysis of Intact Proteoforms and Protein Complexes by Mass Spectrometry. J Proteome Res., 2020 (Online ahead of print) DOI: 10.1021/acs.jproteome.0c00303.
Tags: 武森 A03 - Shigemitsu. H.; Kubota. R.; Nakamura. K.; Matsuzaki. T.; Minami. S.; Aoyama. T.; Urayama. K.; Hamachi. I., Protein-Responsive Protein-Release of Supramolecular/polymer Hydrogel Composite Integrating Enzyme Activation Systems Nature Communications, 2020, 11:3859.
Tags: 浜地 A01 - Mizukoshi. Y.; Takeuchi. K.; Tokunaga. Y.; Matsuo. H.; Imai. M.; Fujisaki. M.; Kamoshida. H.; Takizawa. T.; Hanzawa. H.; Shimada. I., Targeting the cryptic sites: NMR-based strategy to improve protein druggability by controlling the conformational equilibrium. Sci Adv., 2020, 6:eabd0480. doi: 10.1126/sciadv.abd0480.
Tags: 竹内 A02 - Kubota, R.; Nagao, K., Tanaka, W.; Matumura, R.; Aoyama, T.; Urayama, K.; Hamachi, I., Control of seed formation allows two distinct self-sorting patterns of supramolecular nano fibers. Nature Communications, 2020, 11(1), 4100. doi:10.1038/s41467-020-17984-x.
Tags: 浜地 A01 - Zhu, H.; Tamura, T.; Fujisawa, A.; Nishikawa, Y.; Cheng, R.; Takato, M.; Hamachi, I., Imaging and profiling of proteins under oxidative conditions in cells and tissues by hydrogen-peroxide-responsive labeling. J. Am. Chem. Soc., 2020, 142(37), 15711–15721. doi:10.1021/jacs.0c02547.
Tags: 浜地 A01 - Tamura, T.; Fujisawa, A.; Tsuchiya, M.; Shen, Y.; Nagao, K.; Kawano, S.; Tamura, Y.; Endo, T.; Umeda, M.; Hamachi, I., Organelle membrane-specific chemical labeling and dynamic imaging in living cells. Nature Chem.Biol., 2020, 6(12), 1361-1367. doi:10.1038/s41589-020-0
Tags: 浜地 A01 - Kubota, R.; Torigoe, S.; Liu, S.; Hamachi, I., In Situ Real-time Confocal Imaging of a Self-assembling Peptide-grafted Polymer Showing pH-responsive Hydrogelation. Chem. Lett., 2020, 49(11), 1319-1323. doi:10.1246/cl.200513
Tags: 浜地 A01 - Shiraiwa, K.; Cheng, R.; Nonaka, H.; Tamura, T.; Hamachi, I., Chemical Tools for Endogenous Protein Labeling and Profiling, Cell Chemical Biology, 2020, 27(8), 970-985(2020) doi:10.1016/j.chem
Tags: 浜地 A01 - Zhu, H.; Hamachi, I., Fluorescence imaging of drug target proteins using chemical probes. Journal of Pharmaceutical Analysis, 2020, 10(5), 426-433. j.jpha.2020.05.013
Tags: 浜地 A01 - Takahashi. H.; Yanamisawa. A.; Kajimoto. S.; Nakabayashi. T., Observation of the changes in the chemical composition of lipid droplets using Raman microscopy. Phys. Chem. Chem. Phys., 2020, 22, 21646-21650.
Doi: 10.1039/d0cp03805a.
Tags: 梶本 A02 - Kohyama, S.;Fujiwara, K; Yoshinaga, N; Doi, N., Conformational equilibrium of MinE regulates allowable concentration ranges of a protein wave for cell division, Nanoscale., 2020, 12:11960 – 11970. doi: 10.1039/D0NR00242A
Tags: 藤原 A02 - Kohyama, S.;Fujiwara, K; Yoshinaga, N; Doi, N., Self-Organization Assay for Min Proteins of Escherichia coli in Micro-droplets Covered with Lipids, bio-protocol, 2020, 10(6): e3561, doi: 10.21769/BioProtoc.3561
Tags: 藤原 A02 - Sato.S.; Nakane. K.; Nakamura. H.; Laccase-Catalysed Tyrosine Click Reaction, Org. Biomol. Chem. 18, 3664-3668 (2020) DOI: 10.1039/d0ob00650e.
Tags: 中村A01 - Tsushima. M.; Sato. S.; Nakane. K.; Nakamura. H.; Target protein identification on the photocatalyst-functionalized magnetic affinity beads, Current Protocol. 101(1) DOI:10.1002/cpps.108
Tags: 中村A01 - Sato. S.; Nakamura. H.; Labeling of Peroxidase-Induced Oxidative Stress Hotspots by Hemin-Catalyzed Tyrosine Click, Chem. Pharm. Bull. 68(9), 885-890 (2020) DOI:10.1248/cpb.c20-00434
Tags: 中村A01 - Asawa. Y.; Yoshimori. A.; Bajorath. J.; Nakamura. H.; Prediction of an MMP-1 Inhibitor Activity Cliff Using the SAR Matrix Approach and Its Experimental Validation, Sci. Rep. 10, 14710 (2020) DOI:10.1038/s41598-020-71696-2
Tags: 中村A01 - Masuzawa. T.; Sato. S.; Niwa. T.; Taguchi. H.; Nakamura. H.; Oyoshi. T.; G-Quadruplex-Proximity Protein Labeling Based on Peroxidase Activity, Chem. Commun. 2020, 56, 11641-11644 DOI:10.1039/D0CC02571B
Tags: 中村A01 -
Yugandar. S.; Morita. T.; Nakamura. H.;, Rhodium(III)-Catalyzed Direct C-H Functionalization of Isoxazoles with Alkynes, Alkenes and Sulfoxonium Ylides, Org. Biomol. Chem. 18, 8625–8628 (2020) DOI:10.1039/D0OB02027C
Tags: 中村A01 - Nagashima. T.; Hadiwidjaja. S.; Ohsumi. S.; Murata. A.; Hisada. T.; Kato. R.; Okada. Y.; Honda. H.; Shimizu. K.; In vitro model of human skeletal muscle tissues with contractility fabricated by immortalized human myogenic cells, Advanced Biosystems, 4, 2000121 (2020)
DOI:10.1002/adbi.202000121
Tags: 清水A03 - Liu. Q.; Yasui. T.; Nagashima. K.; Yanagida. T.; Hara. M.; Horiuchi. M.; Zhu. Z.; Takahashi. H.; Shimada. T.; Arima. A.; Baba. Y., Ammonia-induced Seed Layer Transformations in A Hydrothermal Growth Process of Zinc Oxide Nanowires, J. Phys. Chem. C 2020, 124, 37, 20563–20568.
DOI : 10.1021/acs.jpcc.0c05490
Tags: 馬場 A03 - Arima. A.; M. Tsutsui.; Yoshida. T.; Tatematsu. K.; Yamazaki. T.; Yokota. K.; Kuroda. S.; Washio. T.; Baba. Y.; Kawai. T., Digital Pathology Platform for Respiratory Tract Infection Diagnosis via Multiplex Single-Particle Detections, ACS Sensors, 2020, 5, 3398–3403.
DOI : 10.1021/acssensors.0c01564
Tags: 馬場 A03 - Yuzu. K.; Yamamoto. N.; Noji. M.; So. M.; Goto. Y.; Iwasaki. T.; Tsubaki. M.; Chatani. E., Multistep changes in amyloid structure induced by cross-seeding on a rugged energy landscape, Biophys. J., 2020, DOI: 10.1016/j.bpj.2020.12.005
Tags: 後藤A02 - Mizuno. H.; Hoshino. J.; So. M.; Kogure. Y.; Fujii. T.; Ubara. Y.; Takaichi. K.; Nakaniwa. T.; Tanaka. H.; Kurisu. G.; Kametani. F.; Nakagawa. M.; Yoshinaga. T.; Sekijima. Y.; Higuchi. K.; Goto. Y.; Yazaki. M., Dialysis-related amyloidosis associated with a novel β2-microglobulin variant, Amyloid, 2020, DOI: 10.1080/13506129.2020.1813097
Tags: 後藤A02 - Nakajima. K.; Yamazaki. T.; Kimura. Y.; So. M.; Goto. Y.; Ogi. H., Time-resolved observation of evolution of amyloid-β oligomer with temporary salt crystals, J. Pyhs. Chem. Lett., 2020, 11(15), 6176-6184. DOI: 10.1021/acs.jpclett.0c01487
Tags: 後藤A02 - Okuwaki. R.; Shinmura. I.; Morita. S.; Matsugami. A.; Hayashi. F.; Goto. Y.; Nishimura. C., Distinct residual and disordered structures of alpha-synuclein analyzed by amide-proton exchange and NMR signal intensity, Biochim Biophys Acta – Proteins and Proteomics, 2020, 1868(9), 140464. DOI: 10.1016/j.bbapap.2020.140464
Tags: 後藤A02 - Ito. T.; Yamamoto. S.; Yamaguchi. K.; Sato. M.; Kaneko. Y.; Goto. S.; Goto. Y.; Narita. I., Inorganic polyphosphate potentiates lipopolysaccharide-induced macrophage inflammatory response, J. Biol. Chem., 2020, 295(12), 4014-4023. DOI: 10.1074/jbc.RA119.011763
Tags: 後藤A02 - Morita. K.; Takeda. S.; Yunoki. A.; Tsuchii. T.; Tanaka. T.; Maruyama. T., Preparation of affinity membranes using polymer phase separation and azido-containing surfactants. Colloids Surf A Physicochem Eng Asp, 2020, DOI: 10.1016/j.colsurfa.2020.125802
Tags: 丸山A01 - Restu. W. K.; Yamamoto. Y.; Nishida. S.; Ienaga. H.; Aoi. T.; Maruyama. T., Hydrogel formation by short D-peptide for cell-culture scaffolds. Mater. Sci. Eng. C, 2020, 111, 110746. DOI:10.1016/j.msec.2020.110746
Tags: 丸山A01 - Kaneko. K.; Hara. M.; Nishino. T.; Maruyama. T., One-step biotinylation of cellulose paper by polymer-coating to prepare a paper-based analytical device. Anal. Chem., 2020, 92, 1978−1987. DOI: 10.1021/acs.analchem.9b04373
Tags: 丸山A01 - Kanemura. S.; Sofia. F. E.; Hirai. N.; Okumura. M.; Kadokura. H.; Inaba. K., Characterization of the ER-resident peroxidases GPx7 and GPx8 shows the higher oxidative activity of GPx7 and its linkage to oxidative protein folding. J. Biol. Chem. 2020, 295, 12772-12785.
DOI: 10.1074/jbc.RA120.013607.
Tags: 奥村A02 - Ninagawa. S.; Tada. S.; Okumura. M.; Inoguchi. K.; Kinoshita. M.; Kanemura. S.; Imami. K.; Umezawa. H.; Ishikawa. T.; Mackin. R.; Torii. S.; Ishihama. Y.; Inaba. K.; Anazawa. T.; Nagamine. T.; Mori. K., Antipsychotic olanzapine-induced misfolding of proinsulin in the endoplasmic reticulum accounts for atypical development of diabetes. eLife 2020 9, e60970.
DOI: 10.7554/eLife.60970.
Tags: 奥村A02 - Okumura. M.; Noi. K.; Inaba. K., Visualization of structural dynamics of protein disulfide isomerase enzymes in catalysis of oxidative folding and reductive unfolding. Curr. Opin. Struct. Biol. 2020 66, 49-57.
DOI: 10.1016/j.sbi.2020.10.004.
Tags: 奥村A02 - Kanemura. S.; Matsusaki. M.; Inaba. K; Okumura. M., PDI family members as guides for client folding and assembly. Int. J. Mol. Sci. 2020 21, E9351.
DOI: 10.3390/ijms21249351.
Tags: 奥村A02 - Matsusaki. M.; Kanemura. S.; Kinoshita. M.; Lee. Y.H.; Inaba. K.; Okumura. M., The protein disulfide isomerase family: from proteostasis to pathgenesis. BBA. General Subject 2020 1864(2) 129338.
DOI: 10.1016/j.bbagen.2019.04.003.
Tags: 奥村A02 - Saio. T.; M. Okumura.; Y.H. Lee., Solution NMR for investigation of liquid-liquid phase separation. Journal of the Korean Magnetic Resonance Society 2020 24 47-52.
DOI: 10.6564/JKMRS.2020.24.2.047.
Tags: 奥村A02 -
Aiga. T.; Manabe. Y.; Ito. K.; Chang. T-C.; Kabayama. K.; Ohshima. S.; Kametani. Y.; Miur. A.; Furukawa. H.; Inaba. H.; Matsuura. K.; Fukase. K., Immunological Evaluation of Co‐assembling a Lipidated Peptide Antigen and Lipophilic Adjuvants as Self‐adjuvanting Anti‐breast Cancer Vaccine Candidates. Angew. Chem. Int. Ed. 2020, 59, 17705-17711. DOI: 10.1002/anie.202007999. Tags: 真鍋A01
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Forgione. R.E.; Di Carluccio. C.; Guzmán-Caldentey. J.; Gaglione. R.; Battista. F.; Chiodo. F.; Manabe. Y.; Arciello. A.; Del Vecchio. P.; Fukase. K.; Molinaro. A.; Martín-Santamaría. S.; Crocker. P.R.; Marchetti. R.; Silipo. A., Unveiling Molecular Recognition of Sialoglycans by Human Siglec-10. iScience 2020, 23, 101231. DOI: 10.1016/j.isci.2020.101231. Tags: 真鍋A01
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Hirao. K.; Ono. R.; Manabe. Y.; Masui. S.; Atomi. H.; Fukase. K., Total Syntheses of C60- and C100-Dolichols. J. Org. Chem. 2020, 85, 11549-11559. DOI: 10.1021/acs.joc.0c01327. Tags: 真鍋A01
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Farabi. K.; Manabe. Y.; Ichikawa. H.; Miyake. S.; Tsutsui. M.; Kabayama. K.; Yamaji. T.; Tanaka. K.; Hung. S.-C.; Fukase. K., Concise and Reliable Syntheses of Glycodendrimers via Self-Activating Click Chemistry: A Robust Strategy for Mimicking Multivalent Glycan–Pathogen Interactions. J. Org. Chem. 2020, 85, 16014-16023. DOI: 10.1021/acs.joc.0c01547. Tags: 真鍋A01
- Takemori. A.; Ishizaki. J.; Nakashima. K.; Shibata. T.; Kato. H.; Kodera. Y.; Suzuki. T.; Hasegawa. H.; Takemori. N., BAC-DROP: Rapid Digestion of Proteome Fractionated via Dissolvable Polyacrylamide Gel Electrophoresis and Its Application to Bottom-Up Proteomics Workflow. J Proteome Res. 2020 Online ahead of print. DOI: 10.1021/acs.jproteome.0c00749.
Tags: 武森 A03 - Suematsu. Y.; Tsai. Y. A.; Takeoka. S.; Franz. C. M.; Arai. S.; Fujie. T., Ultra-thin, transparent, porous substrates as 3D culture scaffolds for engineering ASC spheroids for high-magnification imaging, J. Mater. Chem B, 2020, 8, 6999-7008. DOI: 10.1039/D0TB00723D.
Tags: 新井 A03 - Arai, A.; Watanabe, R.; Hattori, A.; Iio, K.; Hu, Y.; Yoneda, K.; Kigoshi, H.; Kita, M., N,N-Dimethylaminopyrene as a fluorescent affinity mass tag for ligand-binding mode analysis. Sci. Rep. 2020, 10, 7311. DOI: 10.1038/s41598-020-64321-9. Tags: 北 A02
- Hirukawa, M.; Zhang, M.; Echenique–Diaz, L. M.; Mizota, K.; Ohdachi, S. D.; Begué–Quiala, G.; Delgado–Labañino, J. L.; Gámez–Díez, J.; Alvarez–Lemus, J.; Galano Machado, L.; Suárez Núñez, M.; Shibata, T.; Kigoshi, H.; Kita, M. Isolation and structure-activity relationship studies of jacaranones: anti-inflammatory quinoids from the Cuban endemic plant Jacaranda arborea (Bignoniaceae). Tetrahedron Lett. 2020, 61, 152005. DOI: 10.1016/j.tetlet.2020.152005. Tags: 北 A02
- Zhang, M.; Sunaba, T.; Sun, Y.; Shibata, T.; Sasaki, K.; Isoda, H.; Kigoshi, H.; Kita, M. Acyl-CoA dehydrogenase long chain (ACADL) is a target protein of stylissatin A, an anti-inflammatory cyclic heptapeptide. J. Antibiot. 2020, 73, 589-592. DOI: 10.1038/s41429-020-0322-5. Tags: 北 A02
- Noji, M.; Samejima, T.; Yamaguchi, K.; So, M.; Yuzu, K.; Chatani, E.; Akazawa-Ogawa, Y.; Hagihara, Y.; Kawata, Y.; Ikenaka, K.; Mochizuki, H.; Kardos, J.; Otzen, D. E.; Bellotti, V.; Buchner, J.; Goto, Y., Breakdown of supersaturation barrier links protein folding to amyloid formation, Commun. Biol. 2021, 4(120), 1-10. DOI: 10.1038/s42003-020-01641-6 Tags: 後藤A02
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Furukawa, H.; Inaba, H.; Inoue, F.; Sasaki, Y.; Akiyoshi, K.; Matsuura, K., Enveloped Artificial Viral Capsids Self-assembled from Anionic β-Annulus Peptide and Cationic Lipid Bilayer, Chem. Commun. 56, 7092–7095 (2020). DOI: 10.1039/D0CC02622K. Tags: 松浦A02
- Matsuura, K.; Shiomi, Y.; Mizuta, T.; Inaba, H., Horseradish Peroxidase-Decorated Artificial Viral Capsid Constructed from b-Annulus Peptide via Interaction between His-Tag and Ni-NTA, Processes, 8(11), 1455 (2020). DOI: 10.3390/pr8111455. Tags: 松浦A02
- Nakamura, Y.; Sato, Y.; Inaba, H.; Iwasaki, T.; Matsuura, K., Encapsulation of mRNA into artificial viral capsids via hybridization of a b-annulus-dT20 conjugate and the poly(A) tail of mRNA, Appl. Sci. 10(22), 8004 (2020). DOI: 10.3390/app10228004. Tags: 松浦A02
- Higashi, S. L.; Hirosawa, K. M.; Suzuki, K. G.N.; Matsuura, K.; Ikeda, M., One-Pot Construction and Fluorescence Imaging of Multicomponent Supramolecular Materials Comprising Self-Sorted Supramolecular Architectures of DNA and Semi-Artificial Glycopeptides, ACS Applied Bio Materials, 3(12), 9082-9092 (2020). DOI: 10.1021/acsabm.0c01316. Tags: 松浦A02
- Otsuka. Y.; Kamihoriuchi. B.; Takeuchi. A.; Iwata/ F.; Tortorella.S.; Matsumoto. T., High-Spatial-Resolution Multimodal Imaging by Tapping-Mode Scanning Probe Electrospray Ionization with Feedback Control, Anal. Chem. 2021, 2263–2272 DOI : 10.1021/acs.analchem.0c04144
Tags: 大塚A03 - S.Takahashi, H. Okura, P. Chilika, S. Ghosh, and N. Sugimoto
Molecular crowding induces primer extension by RNA polymerase through base stacking beyond Watson–Crick rules,RSC Adv., 10, 33052-33058 (2020) [Selected as a HOT Article]
Tags:杉本 A02 -
S.Takahashi, P. Herdwijn, and N. Sugimoto
Effect of Molecular Crowding on DNA Polymerase Reactions along Unnatural DNA Templates,Molecules, 25, 4120 (2020)
Tags:杉本 A02 -
D.Banerjee, H. Tateishi-Karimata, T. Ohyama, S. Ghosh, T. Endoh, S. Takahashi, and N. Sugimoto
Improved nearest-neighbor parameters for the stability of RNA/DNA hybrids under a physiological condition,Nucleic Acids Res., 48, 12042-12054 (2020) [Selected as a Cover]
Tags:杉本 A02 -
S.Lathwal, S. S. Yerneni, S. Boye, U. L. Muza, S. Takahashi, N. Sugimoto, A. Lederer, S. R. Das, P. G. Campbell, and K. Matyjaszewski,Engineering exosome polymer hybrids by atom transfer radical polymerization,Proc. Natl. Acad. Sci. U. S. A., 118, e2020241118 (2021)
Tags:杉本 A02 -
杉本渉、川内敬子、三好大輔
RAS mRNAを狙った分子標的型光線力学療法
Medical Science Digest, 46 (9), 26-27（2020）
Tags:杉本 A02 -
Kazuki Kohata, Daisuke Miyoshi
RNA Phase Separation-Mediated Direction of Molecular Trafficking Under Conditions of Molecular Crowding doi: 10.1007/s12551-020-00696-3
Biophys. Rev., 12(3), 669–676（2020）
Tags:杉本 A02 -
Takeru Torii, Wataru Sugimoto, Keiko Kawauchi, Daisuke Miyoshi
Novel Strategy of Photodynamic Therapy Targeting RAS mRNA with G-Quadruplex Ligands for Cancer Treatment
J Data Mining Genomics Proteomics, 11(2), No:1000226 （2020）
Tags:杉本 A02 -
Keiko Kawauchi, Ryoto Urano, Natsuki Kinoshita, Shin Kuwamoto, Takeru Torii, Yoshiki Hashimoto, Shinya Taniguchi, Mitsuki Tsuruta, Daisuke Miyoshi
Photosensitizers Based on G-Quadruplex Ligand for Cancer Photodynamic Therapy
Genes, 11 (11), 1340; doi.org/10.3390/genes11111340（2020）
Tags:杉本 A02 -
Mitsuki Tsuruta, Yui Sugitani, Naoki Sugimoto, D andDaisuke Miyoshi
Combined Effects of Methylated Cytosine and Molecular Crowding on the Thermodynamic Stability of DNA Duplexes
Int. J. Mol. Sci. , 22(2), 947 https://doi.org/10.3390/ijms22020947（2021）
Tags:杉本 A02 - Choi. S.; Nakasone. Y.; Hellingwerf. K.; Terazima. M., Photoreaction Dynamics of a Full-Length Protein YtvA and Intermolecular Interaction with RsbRA, Biochemistry, 59(50), 4703-4710.
DOI: 10.1021/acs.biochem.0c00888. (2020)
Tags:中曽根 A02 - Kim. S.; Nakasone. Y.; Takakado. A.; Yamazaki. Y.; Kamikubo. H.; Terazima. M., Wavelength-Dependent Photoreaction of PYP from Rhodobacter capsulatus, Biochemistry, 59(51), 4810-4821.
DOI: 10.1021/acs.biochem.0c00821. (2020)
Tags:中曽根 A02 - Takaramoto. S.; Nakasone. Y.; Sadakane. K.; Maruta. S.; Terazima. M.,
Time-resolved detection of SDS-induced conformational changes in α-synuclein by a micro-stopped-flow system
RSC Advances, 11(2), 1086-1097.
DOI: 10.1039/D0RA09614H. (2021)
Tags:中曽根 A02 - Satopathi. S.; Endoh. T.; Podbevšek. P.; Plavec. J.; Sugimoto. N., Transcriptome screening followed by integrated physicochemical and structural analyses for investigating RNA-mediated berberine activity, Nucleic Acids Res.,49, in press (2021)
Tags:杉本 A02
- Okada. S.; Matsusaki. M.; Okumura. M.; and Muraoka. T., Conjugate of Thiol and Guanidyl Units with Oligoethylene Glycol Linkage for Manipulation of Oxidative Protein Folding.
molecules 26 879 (2021)
Tags: 奥村A02 - Hirayama. C.; Machida. K.; Noi. K.; Murakawa. T.; Okumura. M.; Ogura. T.; Imataka. H.; Inaba. K., Distinct roles and actions of protein disulfide isomerase family enzymes in catalysis of co-translational disulfide bond formation.
iScience 4 102296 (2021)
Tags: 奥村A02 - Okumura. M.; Kanemura. S.; Matsusaki. M.; Kinoshita. M.; Saio. T.; Ito. D.; Hirayama. C.; Kumeta. H.; Watabe. M.; Amagai. Y.; Lee. Y.H.; Akiyama. S.; Inaba. K., A unique leucine-valine adhesive motif supports structure and function of protein disulfide isomerase P5 via dimerization.
Structure 29 1-14 (2021)
Tags: 奥村A02 - Tanikawa. Y.; Kanemura. S.; Ito. D.; Lin. Y.; Matsusaki. M.; Kuroki. K.; Yamaguchi. H.; Maenaka. K.; Lee. Y.H.; Inaba. K.; Okumura. M., Ca2+ regulates ERp57-calnexin complex formation. molecules 26 2853 (2021)
Tags: 奥村A02 - Yamaguchi. M.; Yoshihara. K.; Suda. K.; Nakaoka. H.; Yachida. N.; Ueda. H.; Sugino. K.; Mori. Y.; Yamawaki. K.; Tamura. R.; Ishiguro. T.; Motoyama. T.; Watanabe. Y.; Okuda. S.; Tainaka. K.; Enomoto. T., Three-dimensional understanding of the morphological complexity of the human uterine endometrium. iScience 24(4):102258 (2021). doi: 10.1016/j.isci.2021.102258. Tags: 田井中A01
- Kubota. S.I.; Takahashi. K.; Mano. T.; Matsumoto. K.; Katsumata. T.; Shi. S.; Tainaka. K.; Ueda. H.R.; Ehata. S.; Miyazono. K., Whole-organ analysis of TGF-β-mediated remodelling of the tumour microenvironment by tissue clearing. Commun. Biol. 4(1):294 (2021) doi: 10.1038/s42003-021-01786-y. Tags: 田井中A01
- Suwatthanarak. T.; Thiodorus. A. I.; Tanaka. M.; Shimada. T.; Takeshita. D.; Yasui. T.; Baba. Y.; Okochi. M.,
Microfluidic-based capture and release of cancer-derived exosomes via peptide-nanowire hybrid interface
Lab on a Chip, 2021,21, 597-607,
Tags: 馬場 A03 - Musa. M.; Yasui. T.; Nagashima. K.; Horiuchi. M.; Zhu. Z.; Liu. Q.; Shimada. T.; Arima. A.; Yanagida. T.; Baba. Y.,
ZnO/SiO2 core/shell nanowires for capturing CpG rich single-stranded DNAs
Anal. Methods, 2021,13, 337-344
Tags: 馬場 A03 - Musa. M.; Yasui. T.; Zhu. Z.; Nagashima. K.; Ono. M.; Liu. Q.; Takahashi. H.; Shimada. T.; Arima. A.; Yanagida. T.; Baba. Y.,
Oxide Nanowire Microfluidic Devices for Capturing Single-stranded DNAs
Anal. Sci., 2021. doi.org/10.2116/analsci.20P421
Tags: 馬場 A03 - Nishimura. Y.; Oshimi. K.; Umehara. Y.; Kumon. Y.; Miyaji. K.; Yukawa. H.; Shikano. Y.; Matsubara. T.; Fujiwara. M.; Baba. Y.; Teki. Y.,
Wide-field fluorescent nanodiamond spin measurements toward real-time large-area intracellular thermometry
Scientific Reports, 2021, 11, 4248(2021), Open Access
Tags: 馬場 A03 - Takahashi. H.; Yasui. T.; Kashida. H.; Makino. K.; Shinjo. K.; Liu. Q.; Shimada. T.; Rahong. S.; Kaji. N.; Asanuma. H.; Baba. Y.,
Microheater-integrated zinc oxide nanowire microfluidic device for hybridization-based detection of target single-stranded DNA
Nanotechnology, 2021, DOI: 10.1088/1361-6528/abef2c
Tags: 馬場 A03 - Kitano. Y.; Aoki. K.; Ohka. F.; Yamazaki. S.; Motomura. K.; Tanahashi. K.; Hirano. M.; Naganawa. T.; Iida. M.; Shiraki. Y.; Nishikawa. T.; Shimizu. H.; Yamaguchi. J.; Maeda. S.; Suzuki. H.; Wakabayashi. T.; Baba. Y.; Yasui. T.; Natsume. A.,
Urinary MicroRNA-Based Diagnostic Model for Central Nervous System Tumors Using Nanowire Scaffolds
ACS Appl. Mater. Interfaces 2021, 13, 15, 17316–17329.
Tags: 馬場 A03 - Yukawa. H.;Yamazaki. S.; Aoki. K.; Muto. K.; Kihara. N.; Sato. K.; Onoshima. D.; Ochiya. T.; Tanaka. Y.; Baba. Y.,
Co-continuous structural effect of size-controlled macro-porous glass membrane on extracellular vesicle collection for the analysis of miRNA
Scientific Reports, 2021, 11, Article number: 8672 (2021) , Open Access
Tags: 馬場 A03 - Zhu. Z.; Yasui. T.; Liu. Q.; Nagashima. K.; Takahashi. T.; Shimada. T.; Yanagida. T.; Baba. Y.,
Fabrication of a Robust In2O3 Nanolines FET Device as a Bio-sensor Platform
Micromachines 2021, 12(6), 642
Tags: 馬場 A03 - Yamamoto. S.; Nishimura. K.; Morita. K.; Kanemitsu. S.; Nishida. Y.; Morimoto. T.; Aoi. T.; Tamura. A.; Maruyama. T., Microenvironment pH-induced selective cell death for potential cancer therapy using nanofibrous self-assembly of a peptide amphiphile, Biomacromolecules, 2021, 22(6), 2524-2531
DOI: 10.1021/acs.biomac.1c00267
Tags: 丸山 A01 - Matsumoto. M.; Kaneko. K.; Hara. M.; Matsui. M.; Morita. K.; Maruyama. T., Covalent immobilization of gold nanoparticles on a plastic substrate and subsequent immobilization of biomolecules, RSC Adv., 2021, 11, 23409-23417.
DOI: 10.1039/D1RA03902D
Tags: 丸山 A01 - Murakami, K.; Kajimoto, S.; Shibata, D.; Kuroi, K.; Fujii, F.; Nakabayashi, T., Observation of liquid-liquid phase separation of ataxin-3 and quantitative evaluation of its concentration in a single droplet using Raman microscopy, Chemical Sciences, 2021, 12, 7411-7418. DOI: 10.1039/D0SC06095J Tags: 梶本 A02
- Shibata, D.; Kajimoto, S.; Nakabayashi, T., Label-free tracking of intracellular molecular crowding with cell-cycle progression using Raman microscopy, Chemical Physics Letters, 2021, 779, 138843 DOI: 10.1016/j.cplett.2021.138843.
Tags: 梶本 A02 -
Tsushima. M.; Sato. S.; Nakane.K.; Nakamura. H., Target protein identification on the photocatalyst-functionalized magnetic affinity beads, Current Protocol. 101(1) DOI: 10.1002/cpps.108
Tags: 中村 A01 -
Sato. S.; Nakamura. H., Labeling of Peroxidase-Induced Oxidative Stress Hotspots by Hemin-Catalyzed Tyrosine Click Chem. Pharm. Bull. 68(9), 885-890 (2020). DOI:10.1248/cpb.c20-00434.
Tags: 中村 A01 -
Asawa. Y.; Yoshimori. A.; Bajorath. J.; Nakamura. H., Prediction of an MMP-1 Inhibitor Activity Cliff Using the SAR Matrix Approach and Its Experimental Validation, Sci. Rep. 10, 14710 (2020). DOI:10.1038/s41598-020-71696-2
Tags: 中村 A01 -
Nakane. K.; Sato. S.; Niwa. T.; Tsushima. M.; Tomoshige. S.; Taguchi. H.; Ishikawa. M.; Nakamura. H., Proximity Histidine Labeling by Umpolung Strategy Using Singlet Oxygen, J. Am. Chem. Soc. 143, 20, 7726–7731(2021) doi: 10.1021/jacs.1c01626
Tags: 中村 A01 - Kuramochi. M.; Omata. H.; Ishihara. M.; Hanslin. ØS.; Mizumaki. M.; Kawamura. N.; Osawa. H.; Suzuki. M.; Mio. K.; Sekiguchi. H.; Sasaki. C. Y., Tilting and rotational motions of silver halide crystal with diffracted X-ray blinking, Scientific Reports, 2021, 11, 4097. DOI: 10.1038/s41598-021-83320-y
Tags: 倉持 A02 - Chang. J.; Baek. Y.; Lee. I.; Sekiguchi. H.; Ichiyanagi. K.; Mio. K.; Nozawa. S.; Fukaya. R.; Adachi. S.; Kuramochi. M.; Sasaki. C. Y., Diffracted X-ray blinking measurements of interleukin 15 receptors in the inner/outer membrane of living NK cells, Biochemical and Biophysical Research Communications, 2021, 556, 53–58. DOI: 10.1016/j.bbrc.2021.03.144
Tags: 倉持 A02 - Arai. T.; Inamasu. R.; Yamaguchi. H.; Sasaki. D.; Sato-Tomita. A.; Sekiguchi. H.; Mio. K.; Tsuda. S.; Kuramochi. M.; Sasaki. C. Y., Laboratory Diffracted X-ray Blinking to Monitor Picometer Motions of Protein Molecules and Application to Crystalline Materials., Structural Dynamics, 2021, 8, 044302. DOI: 10.1063/4.0000112
Tags: 倉持 A02 - Shinkai. Y.; Kuramochi. M.; Miyafusa. T., New Family Members of FG Repeat Proteins and Their Unexplored Roles During Phase Separation., Front. Cell Dev. Biol., 2021, 9, 708702. DOI: 10.3389/fcell.2021.708702
Tags: 倉持 A02 - Matsuura. K.; Fujita. S., A Photoresponsive Artificial Viral Capsid Self-Assembled from an Azobenzene-Containing β-Annulus Peptide, Int. J. Mol. Sci., 22, 4028 (2021). DOI:10.3390/ijms22084028.
Tags: 松浦 A02 -
Kobayashi. R.; Inaba. H.; Matsuura. K., Fluorescence Correlation Spectroscopy Analysis of Effect of Molecular Crowding on Self-Assembly of β-Annulus Peptide into Artificial Viral Capsid, Int. J. Mol. Sci., 22, 4754 (2021)
DOI: 10.3390/ijms22094754.
Tags: 松浦 A02 - Yoshii. T.; Tahara. K.; Suzuki. S.; Hatano. Y.; Kuwata. K.; Tsukiji. S., An improved intracellular synthetic lipidation-induced plasma membrane anchoring system for SNAP-tag fusion proteins, Biochemistry, 2020, 59, 3044–3050. DOI: 10.1021/acs.biochem.0c00410.
Tags: 築地A01 - Sawada. S.; Nakamura,.A.; Yoshii. T.; Kuwata. K.; Nakatsu. F.; Tsukiji. S., Protein-recruiting synthetic molecules targeting the Golgi surface, Chemical Communications, 2020, 56, 15422–15425. DOI: 10.1039/D0CC06908F.
Tags: 築地A01 - Nakanishi. H.; Yoshii. T.; Kawasaki. S.; Hayashi. K.; Tsutsui. K.; Oki. C.; Tsukiji. S.; Saito. H., Light-controllable RNA-protein devices for translational regulation of synthetic mRNAs in mammalian cells, Cell Chemical Biology, 2021, 28, 662–674. DOI: 10.1016/j.chembiol.2021.01.002.
Tags: 築地A01 - Yoshikawa. M.; Yoshii. T.; Ikuta. M.; Tsukiji. S., Synthetic protein condensates that inducible recruit and release protein activity in living cells, Journal of the American Chemical Society, 2021, 143, 6434–6446. DOI: 10.1021/jacs.0c12375.
Tags: 築地A01 -
Tateishi-Karimata. H.; Sugimoto. N., Roles of non-canonical structures of nucleic acids in cancer and neurodegenerative diseases, Nucleic Acids Res.,49, in press (2021)
Tags:杉本A02 - Endoh. T.; Brodyagin. N.; Hnedzko. D.; Sugimoto. N.; Rozners. E., Triple-Helical Binding of Peptide Nucleic Acid Inhibits Maturation of Endogenous MicroRNA-197
ACS Chem. Biol., 16, 1147-1151 (2021) [Selected as a Front Cover]
Tags:杉本 A02 - Shibata. K.; Nakasone. Y.; Terazima. M.,
Enzymatic activity of the blue light-regulated phosphodiesterase BlrP1 from Klebsiella pneumoniae shows a nonlinear dependence on light intensity
FEBS Lett. 2021, 595(10):1473-1479. doi: 10.1002/1873-3468.14073.
Tags:中曽根 A02 - Ikoma. M.; Nakasone. Y.; Terazima. M.,
Photoreaction of photoactivated adenylate cyclase from cyanobacterium Microcoleus chthonoplastes
J Photochem Photobiol B. 2021, 221:112252. doi: 10.1016/j.jphotobiol.2021.112252.
Tags:中曽根 A02 - Nakasone. Y.; Terazima. M.,
A Time-Resolved Diffusion Technique for Detection of the Conformational Changes and Molecular Assembly/Disassembly Processes of Biomolecules
Front Genet. 2021, 12:691010. doi: 10.3389/fgene.2021.691010.
Tags:中曽根 A02 - Yamamoto. S.; Sasahara. K.; Domon. M.; Yamaguchi. K.; Ito. T.; Goto. S.; Goto. Y.; Narita. I., pH-Dependent protein binding properties of uremic toxins in vitro, Toxins (Basel), 2021, 13(2), 116. DOI: 10.3390/toxins13020116.
Tags:後藤 A02 - Nakajima. K.; Noi. K.; Yamaguchi. K.; So. M.; Ikenaka. K.; Mochizuki. H.; Ogi. H.; Goto. Y., Optimized sonoreactor for accelerative amyloid-fibril assays through enhancement of primary nucleation and fragmentation, Ultrason. Sonochem., 2021, 73, 105508. DOI:10.1016/j.ultsonch.2021.105508.
Tags:後藤 A02 - Yamaguchi. K.; So. M.; Aguirre. C.; Ikenaka. K.; Mochizuki. H.; Kawata. Y.; Goto. Y., Polyphosphates induce amyloid fibril formation of α-synuclein in concentration-dependent distinct manners, J. Biol. Chem., 2021, 296, 100510. DOI:10.1016/j.jbc.2021.100510.
Tags:後藤 A02 - Chatani. E.; Yuzu. K.; Ohhashi. Y.; Goto. Y., Current understanding of the structure, stability and dynamic properties of amyloid fibrils, Int. J. Mol. Sci., 2021, 22(9), 4349. DOI:10.3390/ijms22094349.
Tags:後藤 A02 - So. M.; Kimura. Y.; Yamaguchi. K.; Sugiki. T.; Fujiwara. T.; Aguirre. C.; Ikenaka. K.; Mochizuki. H.; Kawata. Y.; Goto. Y., Polyphenol-solubility alters amyloid fibril formation of α-synuclein, Protein Sci., 2021, 30(8), 1701-1713. DOI:10.1002/pro.4130.
Tags:後藤 A02 - Noi. K,; Ikenaka. K.; Mochizuki. H.; Goto. Y.; Ogi. H., Disaggregation behavior of amyloid β fibrils by anthocyanins studied by total-internal-reflection-fluorescence microscopy coupled with a wireless quartz-crystal microbalance biosensor, Anal. Chem., 2021, DOI: 10.1021/acs.analchem.1c01720.
Tags:後藤 A02 -
S. Sato, M. Matsumura, H. Ueda, H. Nakamura,
Preparation of an antigen-responsive fluorogenic immunosensor by tyrosine chemical modification of the antibody complementarity determining region ChemComm, 57, 9760-9763 (2021). DOI: 10.1039/d1cc03231c
Tags: 中村 A01 - Y. Asawa, K. Nishida, K. Domae, K. Kawai, H. S. Ban, H. Asami, J.-Y. Kohno, S. Okada, H. Tokuma, D. Sakano, S. Kume, M. Tanaka, H. Nakamura,
Carborane as an Alternative Efficient Hydrophobic Tag for Protein Degradation,
Bioconjugate Chem. 32(11), 2377–2385. DOI: 10.1021/acs.bioconjchem.1c00431
Tags: 中村 A01 - Asawa. Y.; Hatsuzawa. S.; Yoshimori. A.; Yamada. K.; Katoh. A.; Kouji. H.; Nakamura. H., Comprehensive exploration of chemical space using trisubstituted carboranes, Sci. Rep., 2021,11,24101 DOI: 10.1038/s41598-021-03459-6 Tags: 中村 A01
- K. Yamamoto, N. Yamaoka, Y. Imaizumi, T. Nagashima, T. Furutani, T. Ito, Y. Okada, H. Honda, K. Shimizu, Development of a Human Neuromuscular Tissue-on-a-Chip Model on a 24-Well-Plate-Format Compartmentalized Microfluidic Device, Lab Chip, 2021, 21, 1897-1907, DOI: 10.1039/D1LC00048A
Tags: 清水 A03 - Yang, Q.; Kajimoto, S.; Kobayashi, Y.; Hiramatsu H.; Nakabayashi, T., Regulation of cell volume by nanosecond pulsed electric fields, J. Phys. Chem. B, 2021, 125, 10692-10700, DOI: 10.1021/acs.jpcb.1c06058
Tags: 梶本 A02 - Akui, T.; Fujiwara, K.; Sato, G.; Takinoue, M.; Nomura, S.M.; Doi N., System concentration shift as a regulator of transcription-translation system within liposomes, iScience, 2021, 24(8), 102859, DOI: 10.1016/j.isci.2021.102859
Tags: 藤原 A02 - Deyama, T.; Matsui, Y.; Chadani, Y.; Sekine, Y.; Doi N.,; Fujiwara, K. Transcription-translation of Escherichia coli genome within artificial cells, Chem. Commun., 2021, 57, 10367-10370, DOI: 10.1039/d1cc04401j
Tags: 藤原 A02 - Takahashi, K.; Sato, G.; Doi N.,; Fujiwara, K. A relationship between NTP and cell extract concentration for cell-free protein expression,Life, 2021, 11, 237, DOI: 10.3390/life11030237
Tags: 藤原 A02 -
Ojima, K.; Shiraiwa, K.; Doura, T.; Takato, M.; Komatsu, K.; Yuzaki, M.; Hamachi, I.; Kiyonaka, S. Ligand-directed two-step labeling to quantify neuronal glutamate receptor trafficking. Nature Communications, 2021, 12, 831. doi:10.1038/s41467-021-21082-x
Tags: 浜地 A01 -
Thimaradka, V.; Oh, J. H.; Heroven, C.; Aricescu, A. R.; Yuzaki, M.; Tamura, M.; Hamachi, I. Site-specific covalent labeling of His-tag fused proteins with N-acyl-N-alkyl sulfonamide reagent. Bioorg. Med. Chem., 2021, 30, 115947. doi:10.1016/j.bmc.2020.115947
Tags: 浜地 A01 -
Ueda, T.; Tamura, T.; Kawano, M.; Shiono, K.; Hobor, F.; Wilson, A. J.; Hamachi, I. Enhanced Suppression of a Protein?Protein Interaction in Cells Using Small-Molecule Covalent Inhibitors Based on an N-Acyl-N-alkyl Sulfonamide Warhead J. Am. Chem. Soc., 2021, 143, 4766–4774. doi:10.1021/jacs.1c00703
Tags: 浜地 A01 -
Nakamura, K.; Tanaka, W.; Sada, K.; Kubota, R.; Aoyama, T.; Urayama, K.; Hamachi, I. Photo-triggered spatially controlled out-of-equilibrium patterns of peptide nanofibers in a self-sorting double network hydrogel. J. Am. Chem. Soc., 2021, 143, 19532–19541.doi:10.1021/jacs.1c09172
Tags: 浜地 A01 -
Mino, T.; Sakamoto, S.; Hamachi, I. Recent applications of N-acyl imidazole chemistry in chemical biology. Biosci. Biotechnol. Biochem., 2021, 85, 53–60. doi:10.1093/bbb/zbaa026
Tags: 浜地 A01 -
Tsuchiya, M.; Tamura, T.; Hamachi, I. Organelle-selective labeling of choline-containing phospholipids(CPLs) and real-time imaging in living cells. Current Protocols, 2021, 1, e105. doi:10.1002/cpz1.105
Tags: 浜地 A01 -
Kubota, R.; Tanaka, W.; Hamachi, I. Microscopic Imaging Techniques for Molecular Assemblies: Electron, Atomic Force, and Confocal Microscopies. Chem. Rev., 2021, 121, 14281–14347. doi.org/10.1021/acs.chemrev.0c01334
Tags: 浜地 A01 - Tsutsui, M.; Manabe, Y.; Kabayama, K.; Fukase, K. Synthesis of ABO blood group antigens and functional glycan display on the cell surface. Arkivoc, 2021, iv, 168-185.DOI: 10.24820/ark.5550190.p011.362
Tags: 真鍋A01 - Carluccio, D. C., Forgione, R. E.; Montefiori, M.; Civera, M.; Sattin, S.; Smaldone, G.; Fukase, K.; Manabe, Y.; Crocker, P. R.; Molinaro, A.; Marchetti, R.; Silipo, A. Behavior of glycolylated sialoglycans in the binding pockets of murine and human CD22. iScience, 2021, 24, 101998. DOI: 10.1016/j.isci.2020.101998
Tags: 真鍋A01 - Kaneda-Nakashima, K.; Zhang, Z.; Manabe, Y.; Shimoyama, A.; Kabayama, K.; Watabe, T.; Kanai, Y.; Ooe, K.; Toyoshima, A.; Shirakami, Y.; Yoshimura, T.; Fukuda, M.; Hatazawa, J.; Nakano, T.; Fukase, K.; Shinohara, A. a-Emitting cancer therapy using 211At‐AAMT targeting LAT1. Cancer Sci., 2021, 112, 1132-1140. DOI: 10.1111/cas.14761
Tags: 真鍋A01 - Shirakawa, A.; Manabe, Y.; Fukase, K.; Recent advances in the chemical biology of N-glycans. Molecules, 2021, 26, 1040. DOI: 10.3390/molecules26041040
Tags: 真鍋A01 - Manabe, Y. Chemical biology study on N-glycans. Trends in Glycosci. Glycotechnol. 2021, 33, E63-E67. DOI: 10.4052/tigg.2109.2E
Tags: 真鍋A01 - Shirakawa, A.; Manabe, Y.; Marchetti, R.; Yano, K.; Masui, S.; Silipo, A.; Molinaro, A.; Fukase, K. Chemical Synthesis of Sialyl N-Glycans and Analysis of Their Recognition by Neuraminidase. Angew. Chem. Int. Ed. 2021, 60, 24686-24693. DOI: 10.1002/anie.202111035
Tags: 真鍋A01 - Carluccio, C.; Forgione, R. E.; Bosso, A.; Yokoyama, S.; Manabe, Y.; Pizzo, E.; Molinaro, A.; Fukase, K.; Fragai, M.; Bensing, B. A.; Marchetti, R.*; Silipo A.* Molecular recognition of sialoglycans by streptococcal Siglec-like adhesins: toward the shape of specific inhibitors. RSC Chem. Biol. 2021, 2, 1618-1630. DOI: 10.1039/d1cb00173f
Tags: 真鍋A01 - Furukawa, H.; Inaba,H.; Sasaki, Y.; Akiyoshi, K.; Matsuura, K.* Embedding a Membrane Protein into an Enveloped Artificial Viral Replica. RSC Chem. Biol. 2022, DOI: 10.1039/D1CB00166C
Tags: 松浦A02 -
Nakajima, K.; Toda, H.; Yamaguchi, K.; So, M.; Ikenaka, K.; Mochizuki, H.; Goto, Y.; Ogi, H., Half-time heat map reveals ultrasonic effects on morphology and kinetics of amyloidogenic aggregation reaction, ACS Chem. Neurosci., 2021, 12(18), 3456-3466. DOI:10.1021/acschemneuro.1c00461.
Tags: 後藤 A02
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Yamaguchi, K.; Hasuo, K.; So, M.; Ikenaka, K.; Mochizuki, H.; Goto, Y., Strong acids induce amyloid fibril formation of β2-microglobulin via an anion-binding mechanism, J. Biol. Chem., 2021, 297(5), 101286. DOI:10.1016/j.jbc.2021.101286.
Tags: 後藤 A02
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Bulyáki, É.; Kun, T.; Molnár, T.; Papp, A.; Micsonai, A.; Vadászi, H.; Márialigeti, B.; István Kovács, A.; Gellén, G.; Yamaguchi, K.; Lin, Y.; So, M.; Józsi, M.; Schlosser, G.; Lee, Y.-H.; Liliom, K.; Goto, Y.; Kardos, J., Pathogenic D76N variant of β2-microglobulin: Synergy of diverse effects in both the native and amyloid states, Biology, 2021, 10(11), 1197. DOI:10.3390/biology10111197.
Tags: 後藤 A02
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Noji, M.; Goto, Y., 蛋白質フォールディングとミスフォールディングの統合, 生物物理, 2021, 61(6), 358-365. DOI:10.2142/biophys.61.358.
Tags: 後藤 A02
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Goto, Y.; Nakajima, K.; Yamaguchi, K.; So, M.; Ikenaka, K.; Mochizuki, H.; Ogi, H., Development of HANABI, an ultrasonication-forced amyloid fibril inducer, Neurochem. Int., 2021. DOI: 10.1016/j.neuint.2021.105270. Online ahead of print. PMID: 34954259.
Tags: 後藤 A02
- T. Tsuchii, K. Kaneko, K. Morita, T. Nishino, T. Maruyama, A rewritable surface on a plastic substrate using fluorous affinity, ACS Appl. Mater. Interfaces, 2022. DOI: 10.1021/acsami.1c18633
Tags: 丸山 A01 - Hiromi Takahashi, Takao Yasui, Annop Klamchuen, Narathon Khemasiri, Tuksadon Wuthikhun, Piyawan Paisrisarn, Sakon Rahong, Keiko Shinjo, Yotaro Kitano, Kosuke Aoki, Atsushi Natsume, Yoshinobu Baba, Annealed ZnO/Al203 core-shell nanowire as a platform to capture RNA in blood plasma, Nanomaterials, 2021, 11 (7), 1768,
Tags: 馬場 A03 - Makusu Tsutsui, Kazumichi Yokota, Akihide Arima, Takashi Washio, Yoshinobu Baba, Tomoji Kawai, Detecting Single Molecule Deoxyribonucleic Acid in a Cell Using a Three-Dimensionally Integrated Nanopore, Small Methods, 2021, DOI:10.1002/smtd.202100542
Tags: 馬場 A03 - Taisuke Shimada, Aomi Yoshikawa, Takao Yasui, Seiji Yamasaki, Kazuki Nagashima, Kunihiko Nishino, Takeshi Yanagida, Yoshinobu Baba, ELECTRICAL DISCRIMINATIONS OF DRUG-RESISTANT BACTERIA VIA ANTIBIOTIC STIMULATION- ASSISTED MICROPORE SENSING, MicroTAS 2021, 767-768,
Tags: 馬場 A03 - Keiko Fujino, Taisuke Shimada, Takao Yasui, Kazuki Nagashima, Takashi Yanagida, Noritada Kaji, Yoshinobu Baba, ANALYZING PARTICULATE MATTERS VIA SURFACTANT-ASSISTED MICROFLUIDIC IONIC CURRENT SENSING WITH MACHINE LEARNING-DRIVEN IDENTIFICATION, MicroTAS 2021, 1481-1482, 2021.
Tags: 馬場 A03 - Kunanon Chattrairat, Takao Yasui, Masatoshi Maeki, Manabu Tokeshi, Yoshinobu Baba, Selective Thermal Extraction by Thermoelectric Controller Microfluidic Zinc Oxide Nanowires Device for Artificial Extracellular Vesicle Nanoparticles, MicroTAS 2021, 1179-1180,
Tags: 馬場 A03 - Piyawan Paisrisarn, Takao Yasui, Yoshinobu Baba, NANOWIRE MICROFLUIDIC DEVICES FOR SPECIFIC CHARGE-BASED ISOLATION OF SMALL EXTRACELLULAR VESICLES, MicroTAS 2021, 1209-1210, 2021.
Tags: 馬場 A03 - Hiromi Takahashi, Takao Yasui, Keiko Shinjo, Yusuke Miyazaki, Wataru Shinoda, Takeshi Hasegawa, Yotaro Kitano, Yoshinobu Baba, GLASS MICROFLUIDIC PLATFORM FOR NANOWIRE-ASSISTED URINARY CELL-FREE DNA ISOLATION, MicroTAS 2021, 1401-1402, 2021.
Tags: 馬場 A03 - H. Takahashi, T. Yasui, Y. Baba, Nanobiodevices for the Isolation of Circulating Nucleic Acid for Biomedical Applications, Chemistry Letters,50,1244-1253,2021
Tags: 馬場 A03 - H. Takahashi, Y. Baba, T. Yasui, Oxide nanowire microfluidics addressing previously-unattainable analytical methods for biomolecules towards liquid biopsy, Chemical Communications,57,13234-13245,2021/11/26,
Tags: 馬場 A03 - P. Paisrisarn, T. Yasui, Y. Baba, Nanowire microfluidic devices for specific charge-based isolation of small extracellular vesicles, Micro Total Analysis Systems 2021,1,1209-1210,
Tags: 馬場 A03 - TakaoYasui, Piyawan Paisrisarn, Takeshi Yanagida, Yuki Konakade, Yuta Nakamura, Kazuki Nagashima, Marina Musa, Ivan Adiyasa Thiodorus, Hiromi Takahashi, Tsuyoshi Naganawa, Taisuke Shimada, Noritada Kaji, Takahiro Ochiya, Tomoji Kawai, Yoshinobu Baba, Molecular profiling of extracellular vesicles via charge-based capture using oxide nanowire microfluidics, Biosens. Biolec, 2021, 194, 113589, DOI:10.1016/j.bios.2021.113589
Tags: 馬場 A03 - M. Tsushima, S. Sato, K. Miura, T. Niwa, H. Taguchi, H. Nakamura
Intracellular Photocatalytic-Proximity Labeling for Profiling Protein–Protein Interactions in Microenvironments, ChemComm. accepted (2022). DOI: 10.1039/D1CC05764B
Tags: 中村 A01 - Yoshii. T.; Oki. C.; Watahiki. R.; Nakamura. A.; Tahara. K.; Kuwata. K.; Furuta. T.; Tsukiji. S., Chemo-optogenetic protein translocation system using a photoactivatable self-localizing ligand, ACS Chemical Biology, 2021, 16, 1557–1565. DOI: 10.1021/acschembio.1c00416.
Tags: 築地A01 - Yoshikawa. M.; Tsukiji. S., Modularly built synthetic membraneless organelles enabling targeted protein sequestration and release, Biochemistry, 2021, 60, 3273–3276. DOI: 10.1021/acs.biochem.1c00675.
Tags: 築地A01 - Takemori. A.; Kawashima. Y.; Takemori N., Bottom-up/cross-linking mass spectrometry via simplified sample processing on anion-exchange solid-phase extraction spin column. Chem Commun (Camb). 2022 DOI: 10.1039/d1cc05529a.
Tags: 武森A03 - Umezaki. U.; Hatakenaka. M.; Onodera. K.; Mizutani. H.; Kim. S.; Nakasone. Y.; Terazima. M.; Kimura. Y.
Effect of Hydrated Ionic Liquid on Photocycle and Dynamics of Photoactive Yellow Protein
Molecules. 2021, 26, 4554. doi: 10.3390/molecules26154554.
Tags:中曽根 A02 - Kim. S.; Nakasone. Y.; Takakado. A.; Yamazaki. Y.; Kamikubo. H.; Terazima. M .
A unique photochromic UV-A sensor protein, Rc-PYP, interacting with the PYP-binding protein
Phys. Chem. Chem. Phys. 2021, 23, 17813. doi: 10.1039/d1cp02731j.
Tags:中曽根 A02 - Mitsuki Tsuruta, Yui Sugitani, Naoki Sugimoto, D andDaisuke Miyoshi
Combined Effects of Methylated Cytosine and Molecular Crowding on the Thermodynamic Stability of DNA Duplexes
Int. J. Mol. Sci. 2021, 22(2), 947
DOI: 10.3390/ijms22020947
Tags:杉本A02 - 杉本 渉・橋本 佳樹・川内 敬子・三好 大輔
がん関連RNAを破壊する分子標的型光線力学療法
BIO Clinica（北隆館）, 36 (5), 65-67（2021）
Tags:杉本A02 - 三好大輔, 杉本直己
がん関連mRNAと光線力学療法 CSJカレントレビュー「生体分子と疾患」（化学同人）, 39, 75-83（2021）
Tags:杉本A02 - Wataru Sugimoto, Daisuke Miyoshi, Keiko Kawauchi
Detection of Intracellular Reactive Oxidative Species Using the Fluorescent Probe Hydroxyphenyl Fluorescein (doi: 10.1007/978-1-0716-1258-3_18)
Methods Mol Biol (Live Cell Imaging), 2274, 207-215（2021）
Tags:杉本A02 - 鶴田 充生・取井 猛流・杉本 渉・川内 敬子・三好 大輔
核酸の化学修飾と構造や相分離能の相関
月刊「細胞」（ニューサイエンス社）, 53 (14), 910-913（2021）
Tags:杉本A02 - S.Takahashi, A. Kotar, H. Tateishi-Karimata, S. Bhowmik, Z.-F. Wang, T.-C. Chang, S, Sato, S. Takenaka, J. Plavec, and N. Sugimoto
Chemical Modulation of DNA Replication along G-Quadruplex Based on Topology-Dependent Ligand Binding
Am. Chem. Soc., 143, 16458-16469 (2021) [Selected as a Supplementary Cover]
Tags:杉本A02 -
S.Matsumoto, H. Tateishi-Karimata, T. Ohyama, and N. Sugimoto
Effect of DNA modifications on the transition bet and non-canoncial DNA stransures in CpG islands during senescence
RSC Adv., 11, 37205-37217 (2021)
Tags:杉本A02 - W.Sugimoto, N. Kinoshita, M. Nakata, T. Ohyama, H. Tateishi-Karimata, T. Nishikata, N. Sugimoto, D. Miyoshi, and K. Kawauchi
Intramolecular G-quadruplex-hairpin loop structure competition of a GC-rich exon region in the TMPRSS2 genChem. Commun., in 58. 38-51 (2021)
Tags:杉本A02 -
S.Takahashi, S. Matsumoto, P. Chilka, S. Ghosh, H. Okura, and N. Sugimoto, Dielectricity of a molecularly crowded solution accelerates NTP misincorporation during RNA-dependent RNA polymerization by T7 RNA polymerase.Sci. Rep., 12, 1149 (2022)
Tags:杉本A02 -
W. Sugimoto, N. Kinoshita, M. Nakata, T. Ohyama, H.Tateishi-Karimata, T. Nishikata, N. Sugimoto, D.Miyoshi, K. Kawauchi, Intramolecular G-quadruplex-hairpin loop structure competition of a GC-rich exon region in the TMPRSS2 gene. Chem. Commun. , 58, 48-51（2022）
Tags:杉本A02 - Uchida Y, Higuchi T, Shirota M, Kagami S, Saigusa D, Koshiba S, Yasuda J, Tamiya G, Kuriyama S, Kinoshita K, Yaegashi N, Yamamoto M, Terasaki T, Sugawara J. Identification and Validation of Combination Plasma Biomarker of Afamin, Fibronectin and Sex Hormone-Binding Globulin to Predict Pre-Eclampsia. Biol Pharm Bull. 2021, 44, 804-815.
Tags: 内田A03 - Uchida Y., Sasaki, H., Terasaki, T. Establishment and validation of highly accurate formalin-fixed paraffin-embedded quantitative proteomics by heat-compatible pressure cycling technology using phase-transfer surfactant and SWATH-MS, Scientific Reports, 2020, 10, 11271
Tags: 内田A03 - Zhang, J., Furuta, T., Sabit, H., Tamai, S., Jiapaer, S., Dong, Y., Kinoshita, M., Uchida Y., Ohtsuki, S., Terasaki, T., Zhao, S., Nakada, M. Gelsolin inhibits malignant phenotype of glioblastoma and is regulated by miR-654-5p and miR-450b-5p, Cancer Science, 2020, 111, 2413-2422
Tags: 内田A03 - Uchida Y., Yagi, Y., Takao, M., Takao, M., Tano, M., Umetsu, M., Hirano, S., Usui, T., Tachikawa, M., Terasaki, T. Comparison of Absolute Protein Abundances of Transporters and Receptors among Blood-Brain Barriers at Different Cerebral Regions and the Blood-Spinal Cord Barrier in Humans and Rats, Molecular Pharmaceutics, 2020, 17, 2006-2020
Tags: 内田A03 - Huttunen KM, Terasaki T, Urtti A, Montaser AB, Uchida Y. Pharmacoproteomics of Brain Barrier Transporters and Substrate Design for the Brain Targeted Drug Delivery. Pharm Res. 2022 Mar 7. doi: 10.1007/s11095-022-03193-2.
Tags: 内田A03 - Uchida Y, Takeuchi H, Goto R, Braun C, Fuchs H, Ishiguro N, Takao M, Tano M, Terasaki T. A human blood-arachnoid barrier atlas of transporters, receptors, enzymes, and tight junction and marker proteins: Comparison with dog and pig in absolute abundance. J Neurochem. 2022 Feb 28. doi: 10.1111/jnc.15599.
Tags: 内田A03 - Hirano S, Goto R, Uchida Y. SWATH-Based Comprehensive Determination of the Localization of Apical and Basolateral Membrane Proteins Using Mouse Liver as a Model Tissue. Biomedicines. 2022;10(2):383.
Tags: 内田A03 - Tezuka K, Suzuki M, Sato R, Kawarada S, Terasaki T, Uchida Y. Activation of Annexin A2 signaling at the blood-brain barrier in a mouse model of multiple sclerosis. J Neurochem. 2022;160(6):662-674.
Tags: 内田A03 - Sato R, Ohmori K, Umetsu M, Takao M, Tano M, Grant G, Porter B, Bet A, Terasaki T, Uchida Y. An Atlas of the Quantitative Protein Expression of Anti- Epileptic-Drug Transporters, Metabolizing Enzymes and Tight Junctions at the Blood-Brain Barrier in Epileptic Patients. Pharmaceutics. 2021;13(12):2122.
Tags: 内田A03 - Uchida Y. Quantitative Proteomics-Based Blood-Brain Barrier Study. Biol Pharm Bull. 2021;44(4):465-473.
Tags: 内田A03 - Furuta T, Sugita Y, Komaki S, Ohshima K, Morioka M, Uchida Y, Tachikawa M, Ohtsuki S, Terasaki T, Nakada M. The Multipotential of Leucine-Rich α-2 Glycoprotein 1 as a Clinicopathological Biomarker of Glioblastoma. J Neuropathol Exp Neurol. 2020;79(8):873-879.
Tags: 内田A03 - Takeuchi K, Kofuku Y, Imai S, Ueda T, Tokunaga Y, Toyama Y, Shiraishi Y, Shimada I. Function-Related Dynamics in Multi-Spanning Helical Membrane Proteins Revealed by Solution NMR. Membranes (Basel). 2021 11(8):604.
Tags: 竹内A02 - Tokunaga Y, Takeuchi K. Role of NMR in High Ordered Structure Characterization of Monoclonal Antibodies. Int J Mol Sci. 2020 ;22(1):46.
Tags: 竹内A02 - Kono, M.; Kakegawa, W.; Yoshida, K.; Yuzaki, M., Interneuronal NMDA receptors regulate long-term depression and motor learning in the cerebellum, J Physiol (London), 2019, 597, 3, 903-920.
DOI: 10.1113/JP276794
Tags: 掛川A01 - Matsuda, S.; Kakegawa, W.; Yuzaki, M., PhotonSABER: new tool shedding light on endocytosis and learning mechanisms in vivo, Communicative & Integrative Biology, 2019, 12, 1, 34-37.
DOI: 10.1080/19420889.2019.1586048
Tags: 掛川A01 - Kakegawa, W.; Katoh, A.; Narumi, S.; Miura, E.; Motohashi, J.; Takahashi, A.; Kohda, K.; Fukazawa, Y.; Yuzaki, M.; Matsuda, S., Optogenetic control of synaptic AMPA receptor endocytosis reveals roles of LTD in motor learning, Neuron, 2018, 99, 985-998.
Tags: 掛川A01 -
Otsuka Y., Tapping-mode Scanning Probe Electrospray Ionization: Fusion of SPM with Mass Spectrometry, Jpn. J. Appl. Phys., 2021, 60, SE0802. DOI:10.35848/1347-4065/abefac
Tags: 大塚A03 -
Otsuka Y., Direct liquid extraction and ionization techniques for understanding multimolecular environments in biological systems, Mass Spectrometry (Tokyo), 2021, 10, A0095. DOI:10.5702/massspectrometry.A0095
Tags: 大塚A03 - Kawano K, Yokoyama F, Kamasaka K, Kawamoto J, Ogawa T, Kurihara T, Futaki S. Design of the N-Terminus Substituted Curvature-Sensing Peptides That Exhibit Highly Sensitive Detection Ability of Bacterial Extracellular Vesicles. Chem. Pharm. Bull. (Tokyo). 2021, 69(11):1075-1082. DOI: 10.1248/cpb.c21-00516.
Tags: 二木A01 - Sakamoto K, Furukawa H, Arafiles JVV, Imanishi M, Matsuura K, Futaki S. Artificial Nanocage Formed via Self-Assembly of β-Annulus Peptide for Delivering Biofunctional Proteins into Cell Interiors. Bioconjug. Chem. 2022, 33(2):311-320. DOI: 10.1021/acs.bioconjchem.1c00534.
Tags: 二木A01 - Shinga K, Iwata T, Murata K, Daitoku Y, Michibata J, Arafiles JVV, Sakamoto K, Akishiba M, Takatani-Nakase T, Mizuno S, Sugiyama F, Imanishi M, Futaki S. L17ER4: A cell-permeable attenuated cationic amphiphilic lytic peptide. Bioorg. Med. Chem. 2022, 61:116728. DOI: 10.1016/j.bmc.2022.116728.
Tags: 二木A01 -
Nakagawa Y, Shen HC, Komi Y, Sugiyama S, Kurinomaru T, Tomabechi Y, Krayukhina E, Okamoto K, Yokoyama T, Shirouzu M, Uchiyama S, Inaba M, Niwa T, Sako Y, Taguchi H, Tanaka M., Amyloid conformation-dependent disaggregation in a reconstituted yeast prion system.
Nat Chem Biol. 2022 Mar;18(3):321-331. DOI: 10.1038/s41589-021-00951-y.
Tags: 田中A02 -
Hui KK, Endo R, Sawa A, Tanaka M.
A Perspective on the Potential Involvement of Impaired Proteostasis in Neuropsychiatric Disorders. Biol Psychiatry. 2022 Feb 15;91(4):335-345. DOI: 10.1016/j.biopsych.2021.09.001.
Tags: 田中A02 - R. Y. Utomo, S. Okada, A. Sumiyoshi, I. Aoki, H. Nakamura
Development of an MRI contrast agent for both detection and inhibition of the amyloid-β fibrillation process
RSC Adv. 12, 5027-5030 (2022) DOI: 10.1039/D2RA00614F Tags: 中村 A01 - Sakai T, Kawano K, Iino M, Takeuchi T, Imanishi M, Futaki S. Loosening of Lipid Packing by Cell-Surface Recruitment of Amphiphilic Peptides by Coiled-Coil Tethering. Chembiochem. 2019, 20(16):2151-2159. doi: 10.1002/cbic.201900347.
Tags: 二木A01 - Kawano K, Ogushi M, Masuda T, Futaki S. Development of a Membrane Curvature-Sensing Peptide Based on a Structure-Activity Correlation Study. Chem Pharm Bull (Tokyo). 2019, 67(10):1131-1138. doi: 10.1248/cpb.c19-00465.
Tags: 二木A01 - Hsu WY, Masuda T, Afonin S, Sakai T, Arafiles JVV, Kawano K, Hirose H, Imanishi M, Ulrich AS, Futaki S. Enhancing the activity of membrane remodeling epsin-peptide by trimerization. Bioorg Med Chem Lett. 2020, 30(12):127190. doi: 10.1016/j.bmcl.2020.127190.
Tags: 二木A01 - Masuda T, Hirose H, Baba K, Walrant A, Sagan S, Inagaki N, Fujimoto T, Futaki S. An Artificial Amphiphilic Peptide Promotes Endocytic Uptake by Inducing Membrane Curvature. Bioconjug Chem. 2020, 31(6):1611-1615. doi: 10.1021/acs.bioconjchem.0c00239.
Tags: 二木A01 - Kuroki K, Sakai T, Masuda T, Kawano K, Futaki S. Membrane anchoring of a curvature-inducing peptide, EpN18, promotes membrane translocation of octaarginine. Bioorg Med Chem Lett. 2021, 43:128103. doi: 10.1016/j.bmcl.2021.128103.
Tags: 二木A01 - Kawano K, Yokoyama F, Kawamoto J, Ogawa T, Kurihara T, Futaki S. Development of a Simple and Rapid Method for In Situ Vesicle Detection in Cultured Media. J Mol Biol. 2020, 432(22):5876-5888. doi: 10.1016/j.jmb.2020.09.009.
Tags: 二木A01 - Sakamoto K, Michibata J, Hirai Y, Ide A, Ikitoh A, Takatani-Nakase T, Futaki S. Potentiating the Membrane Interaction of an Attenuated Cationic Amphiphilic Lytic Peptide for Intracellular Protein Delivery by Anchoring with Pyrene Moiety. Bioconjug Chem. 2021, 32(5):950-957. doi: 10.1021/acs.bioconjchem.1c00101.
Tags: 二木A01 - Iwata T, Hirose H, Sakamoto K, Hirai Y, Arafiles JVV, Akishiba M, Imanishi M, Futaki S. Liquid Droplet Formation and Facile Cytosolic Translocation of IgG in the Presence of Attenuated Cationic Amphiphilic Lytic Peptides. Angew Chem Int Ed Engl. 2021, 60(36):19804-19812. doi: 10.1002/anie.202105527.
Tags: 二木A01 - Futaki S. Design and Creation of Functional Membrane-Interacting Peptides. Syn. Org. Chem. Jpn, 2020, 78(11): 1013–1020. DOI: 10.5059/yukigoseikyokaishi.78.1058
Tags: 二木A01 - Shibata. K.; Nakasone. Y.; Terazima. M.
Selective Photoinduced Dimerization and Slow Recovery of a BLUF Domain of EB1.
J. Phys. Chem. B. 2022, 126, 1024. doi: 10.1021/acs.jpcb.1c10100.
Tags:中曽根 A02 - Tokonami. S.; Onose. M.; Nakasone. Y.; Terazima. M.
Slow Conformational Changes of Blue Light Sensor BLUF Proteins in Milliseconds.
J. Am. Chem. Soc. 2022, 144, 4080. doi: 10.1021/jacs.1c13121.
Tags:中曽根 A02 - Nakasone. Y.; Terazima. M.
Time-resolved diffusion reveals photoreactions of BLUF proteins with similar functional domains.
Photochem. Photobiol. Sci. 2022, doi: 10.1007/s43630-022-00214-2. Online ahead of print.
Tags:中曽根 A02 -
N.Kundu, T.Sharma, S.Kaur, M.Singh, V.Kumar, U.Sharma, A.Jain, J.Shankaraswamy, D.Miyoshi, S. Saxena
Significant structural change in human c-Myc promoter G-quadruplex upon peptide binding in potassium. RSC Adv., 12, 7594-7604 (2022)
Tags:杉本 A02 -
Kentarou Sakamoto, Hiroto Furukawa, Jan Vincent V. Arafiles, Miki Imanishi, Kazunori Matsuura,* Shiroh Futaki*
Artificial nanocage formed via self-assembly of β-annulus peptide for delivering biofunctional proteins into cell interiors. Bioconjugate Chemistry, 2022, 33, 311-320. DOI: 10.1021/acs.bioconjchem.1c00534
Tags: 松浦A02、二木A01
- T. Taniguchi, K. Ishizaki, D. Takagi, K. Nishimura, H. Shigemune, M. Kuramochi, Y. C. Sasaki, H. Koshima, T. Asahi
Superelasticity of a photo-actuating chiral salicylideneamine crystal.
Commun. Chem., Vol.5, No.4, 2022, doi: 10.1038/s42004-021-00618-8
Tags: 倉持 A02 - M. Kuramochi*, Y. Dong, Y. Yang, T. Arai, R. Okada, Y. Shinkai, M. Doi, K. Aoyama, H. Sekiguchi, K. Mio, S. Tsuda, Y. C. Sasaki*
Dynamic Motions of Ice-Binding Proteins in Living Caenorhabditis elegans Using Diffracted X-ray Blinking and Tracking
Biochemistry and Biophysics Reports, Volume 29, 2022, 101224. doi: 10.1016/j.bbrep.2022.101224
Tags: 倉持 A02 - O. Takahashi, M. Tanahashi, S. Yokoi, M. Kaneko, K. Yanaka, S. Nakagawa, H. Maita
The cell type-specific ER membrane protein UGS148 is not essential in mice
Genes to Cells, Volume 27, 2022, 43-60. doi: 10.1111/gtc.12910
Tags: 米田 A03 - K. T. McQuaid, S. Takahashi, L. Baumgaertner, D. J. Cardin, N. G. Paterson, J. P. Hall, N. Sugimoto, and C. J. Cardin
Ruthenium Polypyridyl Complex Bound to a Unimolecular Chair-Form G-Quadruplex
J. Am. Chem. Soc., 144, 5956-5964 (2022)
Tags:杉本 A02 - S. Takahashi, S. Bhowmik, S. Sato, S. Takenaka, and N. Sugimoto
Replication Control of Human Telomere G-Quadruplex DNA by G-Quadruplex Ligands Dependent on Solution Environment
Life, 12, 553 (2022)
Tags:杉本 A02 - S. Satpathi, T. Endoh, and N. Sugimoto
Applicability of Nearest-neighbour Model for Pseudoknot RNAs
Chem. Commun., (2022) in press
Tags:杉本 A02 - S. Matsumoto, S. Takahashi, S. Bhowmik, T. Ohyama, and N. Sugimoto
A volumetric strategy for quantitatively elucidating local hydration network around a G-quadruplex
Anal. Chem., 94, (2022) in press
Tags:杉本 A02 - Murahara, N. Kaji, M. Tokeshi, Y. Baba
Enzyme kinetics in confined geometries at the single enzyme level
Analyst, 147, 1375-1384 (2022)
Tags: 加地 A03 - M. Terada, S. Ide, T. Naito, N. Kimura, M. Matsusaki, N. Kaji
Label-free cancer stem-like cell assay conducted at a single cell level using microfluidic mechanotyping devices
Analytical Chemistry, 93, 14409-14416 (2021)
Tags: 加地 A03 - T. Suzuki, N. Kaji, H. Yasaki, T. Yasui, Y. Baba, Mechanical low-pass filtering of cells for detection of circulating tumor cells in whole blood, Analytical Chemistry, 92, 2483-2491 (2020)
Tags: 加地 A03 -
Noda, N.; Ozawa, T.;, Castanospermine suppresses CD44 ectodomain cleavage as revealed by transmembrane bioluminescent sensors. J. Cell Sci., 135, jcs259314 (2022).
Doi: 10.1242/jcs.259314.
Tags: 小澤A01 -
Nishiguchi, T.; Yoshimura, H.; Kasai, R.S.; Fujiwara, T.K.; Ozawa T.;, Synergetic roles of Formyl Peptide Receptor 1 oligomerization in ligand-induced signal transduction. ACS Chem. Biol., 18, 2577-2587 (2020).
Doi: 10.1021/acschembio.0c00631.
Tags: 小澤A01 - S. Ohnishi, K. Kamiya, Formation of giant lipid vesicle containing dual functions facilitates outer membrane phospholipase ACS Synthetic Biology, 10, 1837-1846 (2021).
Tags: 神谷A03 - K. Kamiya Formation and function of OmpG or OmpA-incorporated liposomes using an in vitro translation system” Scientific Reports, 12, 2376 (2022).
Tags: 神谷A03 - Kondo, T.; Iwatani, Y.; Matsuoka, K.; Fujino, T.; Umemoto, S.; Yokomaku, Y.; Ishizaki, K.; Kito, S.; Sezaki, T.; Hayashi, G.; Murakami, H. Antibody-like proteins that capture and neutralize SARS-CoV-2, Science Advances 2020 6, eabd3916. doi: 10.1126/sciadv.abd3916.
Tags: 林A01 - Ogata, M.; Hayashi, G.; Ichiu, A.; Okamoto, A. L-DNA-tagged fluorescence in situ hybridization for highly sensitive imaging of RNAs in single cells, Organic and Biomolecular Chemistry 2020 18, 8084-8088. doi: 10.1039/d0ob01635g.
Tags: 林A01 - Hao, F.; Murphy, K. J.; Kujirai, T.; Kamo, N.; Kato, J.; Koyama, M.; Okamoto, A.; Hayashi, G.; Kurumizaka, H.; Hayes, J. J. Acetylation-modulated communication between the H3 N-terminal tail domain and the intrinsically disordered H1 C-terminal domain, Nucleic Acids Research 2020 48, 11510-11520. doi: 10.1093/nar/gkaa949.
Tags: 林A01 - Kondo, T.; Eguchi, M.; Kito, S.; Fujino, T.; Hayashi, G.; Murakami, H. cDNA TRAP display for rapid and stable in vitro selection of antibody-like proteins, Chemical Communications 2021 57, 2416-2419. doi: 10.1039/d0cc07541h.
Tags: 林A01 - Kamo, N.; Kujirai, T.; Kurumizaka, H.; Murakami, H.; Hayashi, G.* (co-corresponding author); Okamoto, A.* Organoruthenium-Catalyzed Chemical Protein Synthesis to Elucidate the Functions of Epigenetic Modifications on Heterochromatin Factors, Chemical Science 2021 12, 5926-5937. doi: 10.1039/d1sc00731a.
Tags: 林A01 - Kamo, N.; Hayashi, G.* (co-corresponding author); Okamoto, A.* Silyl-protected propargyl glycine for multiple labeling of peptides by chemoselective silyl-deprotection, Tetrahedron Letters 2021 73, 153093. doi: 10.1016/j.tetlet.2021.153093.
Tags: 林A01 - Kondo, T.; Eguchi, M.; Tsuzuki, N.; Murata, N.; Fujino, T.; Hayashi, G.; Murakami, H. Construction of a Highly Diverse mRNA Library for In Vitro Selection of Monobodies, bio-protocols 2021 11, e4125. doi: 10.21769/BioProtoc.4125
Tags: 林A01 - Koyama, K.; Hayashi, G.; Ueda, H.; Ota, S.; Nagae, G.; Aburatani, H.; Okamoto, A. Base-Resolution Analysis of 5-hydroxymethylcytidine by Selective Oxidation and Reverse Transcription Arrest, Organic and Biomolecular Chemistry 2021 19, 6478-6486. doi: 10.1039/d1ob00995h.
Tags: 林A01 - Kondo, T.; Matsuoka, K.; Umemoto, S.; Fujino, T.; Hayashi, G.; Iwatani, Y.; Murakami, H. Monobodies with potent neutralizing activity against SARS-CoV-2 Delta and other variants of concern, Life Science Alliance 2022 5, e202101322. doi: 10.26508/lsa.202101322.
Tags: 林A01 - R. Hatada, K. Okuwaki, Y. Mochizuki, Y. Handa, K. Fukuzawa, Y. Komeiji, Y. Okiyama, and S. Tanaka, Fragment Molecular Orbital Based Interaction Analyses on COVID-19 Main Protease – Inhibitor N3 Complex (PDB ID: 6LU7). J. Chem. Inf. Model. 60 (2020) pp. 3593-3602.
Tags: 田中 A02 - T. Dornheim, A. Cangi, K. Ramakrishna, M. Bohme, S. Tanaka, and J. Vorberger, Effective Static Approximation: A Fast and Reliable Tool for Warm-Dense Matter Theory, Phys. Rev. Lett. 125 (2020) 235001 (8 pages). https://doi.org/10.1103/PhysRevLett.125.235001
Tags: 田中 A02 - D. Takaya, C. Watanabe, S. Nagase, K. Kamisaka, Y. Okiyama, H. Moriwaki, H. Yuki, T. Sato, N. Kurita, Y. Yagi, T. Takagi, N. Kawashita, K. Takaba, T. Ozawa, M. Takimoto-Kamimura, S. Tanaka, K. Fukuzawa, and T. Honma, FMODB: The World’s First Database of Quantum Mechanical Calculations for Biomacromolecules Based on the Fragment Molecular Orbital Method, J. Chem. Inf. Model. 61 (2021) pp. 777-794.
Tags: 田中 A02 - K. Akisawa, R. Hatada, K. Okuwaki, Y. Mochizuki, K. Fukuzawa, Y. Komeiji, and S. Tanaka, Interaction Analyses on SARS-CoV-2 Spike Protein Based on Fragment Molecular Orbital Calculations, RSC Adv. 11 (2021) pp. 3272-3279. DOI: 10.1039/d0ra09555a
Tags: 田中 A02 - I. Kurisaki and S. Tanaka, Reaction Pathway Sampling and Free Energy Analyses for Multimeric Protein Complex Disassembly by Employing Hybrid Configuration Bias Monte Carlo/Molecular Dynamics Simulation, ACS Omega 6 (2021) pp. 4749-4758. DOI: 10.1021/acsomega.0c05579
Tags: 田中 A02 - C. Watanabe, Y. Okiyama, S. Tanaka, K. Fukuzawa, and T. Honma, Molecular Recognition of SARS-CoV-2 Spike Glycoprotein: Quantum Chemical Hot Spot and Epitope Analyses, Chem. Sci. 12 (2021) pp. 4722-4739. DOI: 10.1039/d0sc06528e
Tags: 田中 A02 - R. Hatada, K. Okuwaki, K. Akisawa, Y. Mochizuki, Y. Handa, K. Fukuzawa, Y. Komeiji, Y. Okiyama, and S. Tanaka, Statistical Interaction Analyses between SARS-CoV-2 Main Protease and Inhibitor N3 by Combining Molecular Dynamics Simulation and Fragment Molecular Orbital Calculation, Appl. Phys. Express 14 (2021) 027003 (5 pages). https://doi.org/10.35848/1882-0786/abdac6
Tags: 田中 A02 - K. Sakaguchi, Y. Okiyama, and S. Tanaka, In Silico Modeling of PAX8–PPARγ Fusion Protein in Thyroid Carcinoma: Influence of Structural Perturbation by Fusion on Ligand-Binding Affinity, J. Comput. Aided Mol. Des. 35 (2021) pp. 629-642. https://doi.org/10.1007/s10822-021-00381-x
Tags: 田中 A02 - Y. Okiyama, Y. Mochizuki, M. Yamanaka, and S. Tanaka, Density-Matrix Based Scheme of Basis Selection for Linear Combination of Fragment Molecular Orbitals, J. Phys. Soc. Jpn. 90 (2021) 064301 (14 pages). https://doi.org/10.7566/JPSJ.90.064301
Tags: 田中 A02 - S. Tanaka, S. Tokutomi, R. Hatada, K. Okuwaki, K. Akisawa, K. Fukuzawa, Y. Komeiji, Y. Okiyama, and Y. Mochizuki, Dynamic Cooperativity of Ligand-Residue Interactions Evaluated with the Fragment Molecular Orbital Method, J. Phys. Chem. B 125 (2021) pp. 6501-6512. https://doi.org/10.1021/acs.jpcb.1c03043
Tags: 田中 A02 - K. Akisawa, R. Hatada, K. Okuwaki, S. Kitahara, Y. Tachino, Y. Mochizuki, Y. Komeiji, and S. Tanaka, Fragment Molecular Orbital Based Interaction Analyses on Complexes between SARS-CoV-2 RBD Variants and ACE2, Jpn. J. Appl. Phys. 60 (2021) 090901 (5 pages). https://doi.org/10.35848/1347-4065/ac1857
Tags: 田中 A02 - S. Tanaka, Appearance of Thermal Time, Found. Phys. 51 (2021) 34 (12 pages). https://doi.org/10.1007/s10701-021-00445-w
Tags: 田中 A02 - A. Nishiyama, S. Tanaka, and J.A. Tuszynski, Non-Equilibrium Quantum Brain Dynamics II: Formulation in 3+1 Dimensions, Physica A 567 (2021) 125706 (23 pages). https://doi.org/10.1016/j.physa.2020.125706
Tags: 田中 A02 - M. Ikejo, H. Watanabe, K. Shimamura, and S. Tanaka, Improvement of the Force Field for β-D-Glucose with Machine Learning, Molecules 26 (2021) 6691 (18 pages).
https://doi.org/10.3390/molecules26216691
Tags: 田中 A02 - I. Kurisaki and S. Tanaka, Elucidating Microscopic Events Driven by GTP Hydrolysis Reaction in the Ras-GAP System with Semi-Reactive Molecular Dynamics Simulations: The Alternative Role of a Phosphate Binding Loop for Mechanical Energy Storage, Phys. Chem. Chem. Phys. 23 (2021) pp. 26151-26164. https://doi.org/10.1039/D1CP04061H
Tags: 田中 A02 - K. Okuwaki, K. Akisawa, R. Hatada, Y. Mochizuki, K. Fukuzawa, Y. Komeiji, and S. Tanaka, Collective Residue Interactions in Trimer Complexes of SARS-CoV-2 Spike Proteins Analyzed by Fragment Molecular Orbital Method, Appl. Phys. Express 15 (2022) 017001 (8 pages). https://doi.org/10.35848/1882-0786/ac4300
Tags: 田中 A02 - K. Fukuzawa and S. Tanaka, Fragment Molecular Orbital Calculations for Biomolecules, Curr. Opin. Struct. Biol. 72 (2022) pp. 127-134.
https://doi.org/10.1016/j.sbi.2021.08.010
Tags: 田中 A02 - Senoo, A; Yamada, Y.; Ojima, K.; Doura, T.; Hamachi, I.; Kiyonaka S. Orthogonal activation of metabotropic glutamate receptor using coordination chemogenetics. Frontiers in Chemistry, 2022, 9, 825669. doi:10.3389/fchem.2021.825669
Tags: 浜地 A01 - Yaginuma, H., Ohtake, K., Akamatsu,T., Noji, H., *Tabata, K.V., A microreactor sealing method using adhesive tape for digital bioassays, Lab on a chip,2022 (In press)
DOI: 10.1039/D2LC00065B
Tags: 田端 A03 - Ueno,H., Sawada,H., Soga,N., Sano,M., Nara,S., Tabata,K.V., Su’etsugu, M., *Noji,H., Amplification of Over 100 kbp DNA from Single Template Molecules in Femtoliter Droplets, ACS Synthetic Biology, 10(9):2179-2186.(2021)
DOI: 10.1021/acssynbio.0c00584.
Tags: 田端 A03 -
Honda, S., Minagawa, Y., *Noji, H., *Tabata, K.V., Multidimensional Digital Bioassay Platform Based on an Air-Sealed Femtoliter Reactor Array Device, Analytical Chemistry, 93;13:5494-5502.(2021)
DOI: 10.1021/acs.analchem.0c05360
Tags: 田端 A03 - Futaki S. Functional Peptides That Target Biomembranes: Design and Modes of Action. Chem Pharm Bull (Tokyo). 2021;69(7):601-607. doi: 10.1248/cpb.c21-00140. PMID: 34193708.
Tags: 二木 A01 -
Nagano Y, Arafiles JVV, Kuwata K, Kawaguchi Y, Imanishi M, Hirose H, Futaki S. Grafting Hydrophobic Amino Acids Critical for Inhibition of Protein-Protein Interactions on a Cell-Penetrating Peptide Scaffold. Mol Pharm. 2021 Dec 27. doi: 10.1021/acs.molpharmaceut.1c00671. Epub ahead of print. PMID: 34958576.
Tags: 二木 A01 - Kusano, S.; Nakamura, S.; Izumi, M.; Hagihara, S. Development of 1,8-naphthalimide dyes for rapid imaging of subcellular compartments in plants. Chem Commun (Camb) 2021. DOI:10.1039/d1cc05798g
Tags: 萩原 A01 - Yoshimura, M.; Kim, FS.; Takise, R.; Kusano, S.; Nakamura, S.; Izumi, M.; Yagi, A.; Itami, K.; Hagihara S. Development of potent inhibitors for strigolactone receptor DWARF 14. Chem. Commun., 2020, 56, 14917-14919
Tags: 萩原 A01 - Motomura K, Natsume A, Iijima K, Kuramitsu S, Fujii M, Yamamoto T, Maesawa S, Sugiura J, Wakabayashi T. Surgical benefits of combined awake craniotomy and intraoperative magnetic resonance imaging for gliomas associated with eloquent areas. J Neurosurg. 127. 790-797. 2017.
Doi: 10.3171/2016.9.JNS16152
Tags: 夏目 A03 - Ohka F, Yamamichi A, Kurimoto M, Motomura K, Tanahashi K, Suzuki H, Aoki K, Deguchi S, Chalise L, Hirano M, Kato A, Nishimura Y, Hara M, Kato Y, Wakabayashi T, Natsume A*. A novel all-in-one intraoperative genotyping system for IDH1-mutant glioma. Brain Tumor Pathol. 34. 91-97. 2017.
Doi: 10.1007/s10014-017-0281-0
Tags: 夏目 A03 - Koyama H, Ikenuma H, Toda H, Kondo G, Hirano M, Kato M, Abe J, Yamada T, Wakabayashi T, Ito K, Natsume A, Suzuki M. Synthesis of PET probe O6-[(3-[11C]methyl)benzyl]guanine by Pd0-mediated rapid C-[11C]methylation toward imaging DNA repair protein O6-methylguanine-DNA methyltransferase in glioblastoma. Bioorg Med Chem Lett. 27. 1892-1896. 2017.
Doi: 10.1016/j.bmcl.2017.03.045
Tags: 夏目 A03 - Han YP, Enomoto A, Shiraki Y, Wang SQ, Wang X, Toyokuni S, Asai N, Ushida K, Ara H, Ohka F, Wakabayashi T, Ma J, Natsume A, Takahashi M. Significance of low mTORC1 activity in defining the characteristics of brain tumor stem cells. Neuro Oncol. 19. 636-647. 2017.
Doi: 10.1093/neuonc/now237
Tags: 夏目 A03 - Chalise L, Motomura K, Ohka F, Hirano M, Hara M, Nishimura Y, Natsume A, Wakabayashi T. Comparing the Efficacy of DeVIC Therapy and High-dose Methotrexate Monotherapy with Whole-brain Radiation Therapy for Newly-diagnosed Primary Central Nervous System Lymphoma: A Single Institution Study. Anticancer Res. 37. 5215-5223. 2017.
Doi: 10.21873/anticanres.11945
Tags: 夏目 A03 - Shiraki Y, Mii S, Enomoto A, Momota H, Han YP, Kato T, Ushida K, Kato A, Asai N, Murakumo Y, Aoki K, Suzuki H, Ohka F, Wakabayashi T, Todo T, Ogawa S, Natsume A*, Takahashi M. Significance of perivascular tumour cells defined by CD109 expression in progression of glioma. J Pathol. 243. 468-480. 2017
Doi: 10.1002/path.4981
Tags: 夏目 A03 - Motomura A, Shimizu M, Kato A, Motomura K, Yamamichi A, Koyama H, Ohka F, Nishikawa T, Nishimura Y, Hara M, Fukuda T, Bando Y, Nishimura T, Wakabayashi T, Natsume A*. Remote ischemic preconditioning protects human neural stem cells from oxidative stress. Apoptosis. 22. 1353-1361. 2017.
Doi: 10.1007/s10495-017-1425-8
Tags: 夏目 A03 - Ranjit M, Hirano M, Aoki K, Okuno Y, Ohka F, Yamamichi A, Kato A, Maeda S, Motomura K, Matsuo K, Enomoto A, Ino Y, Todo T, Takahashi M, Wakabayashi T, Kato T, Natsume A. Aberrant Active cis-Regulatory Elements Associated with Downregulation of RET Finger Protein Overcome Chemoresistance in Glioblastoma. Cell Rep. 26. 2274-2281. 2019.
Doi: 10.1016/j.celrep.2019.01.109.
Tags: 夏目 A03 - Matsumura N, Nobusawa S, Ito J, Kakita A, Suzuki H, Fujii Y, Fukuda M, Iwasaki M, Nakasato N, Tominaga T, Natsume A, Mikami Y, Shinojima N, Yamazaki T, Nakazato Y, Hirato J, Yokoo H. Multiplex ligation-dependent probe amplification analysis is useful for detecting a copy number gain of the FGFR1 tyrosine kinase domain in dysembryoplastic neuroepithelial tumors. J Neurooncol. 143. 27-33. 2019.
Doi: 10.1007/s11060-019-03138-7.
Tags: 夏目 A03 - Tanahashi K, Araki Y, Uda K, Muraoka S, Motomura K, Lushun C, Wakabayashi T, Natsume A*. Posterior Cerebral Artery Reconstruction by In-Situ Bypass with Superior Cerebellar Artery via Occipital Transtentorial Approach. World Neurosurg. 126. 24-29. 2019.
Doi: 10.1016/j.wneu.2019.02.127.
Tags: 夏目 A03 - Motomura K, Chalise L, Ohka F, Aoki K, Tanahashi K, Hirano M, Nishikawa T, Yamaguchi J, Shimizu H, Wakabayashi T, Natsume A*. Neurocognitive and functional outcomes in patients with diffuse frontal lower-grade gliomas undergoing intraoperative awake brain mapping. J Neurosurg. 17. 1−9. 2019.
Doi: 10.3171/2019.3.JNS19211.
Tags: 夏目 A03 - Motomura K, Terasawa Y, Natsume A, Iijima K, Chalise L, Sugiura J, Yamamoto H, Koyama K, Wakabayashi T, Umeda S. Anterior insular cortex stimulation and its effects on emotion recognition. Brain Struct Funct. 224. 2167-2181. 2019.
Doi: 10.1007/s00429-019-01895-9.
Tags: 夏目 A03 - Yamaguchi J, Motomura K, Ohka F, Aoki K, Tanahashi K, Hirano M, Nishikawa T, 20.Shimizu H, Wakabayashi T, Natsume A. Spontaneous Tumor Regression of Intracranial Solitary Fibrous Tumor Originating From the Medulla Oblongata: A Case Report and Literature Review. World Neurosurg. 130. 400-404. 2019.
Doi: 10.1016/j.wneu.2019.07.052.
Tags: 夏目 A03 - Ohka F, Shinjo K, Deguchi S, Matsui Y, Okuno Y, Katsushima K, Suzuki M, Kato A, Ogiso N, Yamamichi A, Aoki K, Suzuki H, Sato S, Arul Rayan N, Prabhakar S, Göke J, Shimamura T, Maruyama R, Takahashi S, Suzumura A, Kimura H, Wakabayashi T, Zong H, Natsume A*, Kondo Y. Pathogenic Epigenetic Consequences of Genetic Alterations in IDH-Wild-Type Diffuse Astrocytic Gliomas. Cancer Res. 79. 4814-4827. 2019.
Doi: 10.1158/0008-5472.CAN-19-1272.
Tags: 夏目 A03 - Adilijiang A, Hirano M, Okuno Y, Aoki K, Ohka F, Maeda S, Tanahashi K, Motomura K, Shimizu H, Yamaguchi J, Wakabayashi T, Natsume A*. Next Generation Sequencing-Based Transcriptome Predicts Bevacizumab Efficacy in Combination with Temozolomide in Glioblastoma. Molecules. 24. E3046. 2019.
Doi: 10.3390/molecules24173046.
Tags: 夏目 A03 - Yoshida A, Motomura K, Natsume A, Chalise L, Iijima K, Hara D, Kadono I, Wakai K, Wakabayashi T. Preoperative predictive factors affecting return to work in patients with gliomas undergoing awake brain mapping. J Neurooncol. 146. 195-205. 2020.
Doi: 10.1007/s11060-019-03371-0.
Tags: 夏目 A03 - Maeda S, Ohka F, Okuno Y, Aoki K, Motomura K, Takeuchi K, Kusakari H, Yanagisawa N, Sato S, Yamaguchi J, Tanahashi K, Hirano M, Kato A, Shimizu H, Kitano Y, Yamazaki S, Yamashita S, Takeshima H, Shinjo K, Kondo Y, Wakabayashi T, Natsume A*. H3F3A mutant allele specific imbalance in an aggressive subtype of diffuse midline glioma, H3 K27M-mutant. Acta Neuropathol Commun. 8. 8. 2020.
Doi: 10.1186/s40478-020-0882-4.
Tags: 夏目 A03 - Tanahashi K, Uda K, Araki Y, Takeuchi K, Choo J, Chalise L, Motomura K, Ohka F, Wakabayashi T, Natsume A. Trautmann-focused mastoidectomy for a simple, safe presigmoid approach: technical note. J Neurosurg. 1-5, 2020.
Doi: 10.3171/2020.1.JNS193179.
Tags: 夏目 A03 - Nishimura Y, Hara M, Natsume A, Wakabayashi T, Ginsberg HJ. Complete resection and untethering of the cervical and thoracic spinal dermal sinus tracts in adult patients. Nagoya J Med Sci, 82, 567-77, 2020.
Doi: 10.18999/nagjms.82.3.567.
Tags: 夏目 A03 - Shimizu H, Motomura K, Ohka F, Aoki K, Tanahashi K, Hirano M, Chalise L, Nishikawa T, Yamaguchi J, Yoshida J, Natsume A, Wakabayashi T. Long-term survival in patients with primary intracranial germ cell tumors treated with surgery, platinum-based chemotherapy, and radiotherapy: a single-institution study, J Neurosurg, 1-9, 2020.
Doi: 10.3171/2020.6.JNS20638.
Tags: 夏目 A03 - Deguchi S, Nakasu Y, Sakaida T, Akimoto J, Tanahashi K, Natsume A, Takahashi M, Okuda T, Asakura H, Mitsuya K, Hayashi N, Narita Y. Surgical outcome and graded prognostic assessment of patients with brain metastasis from adult sarcoma: multi-institutional retrospective study in Japan, Int J Clin Oncol, 25, 1995-2005, 2020.
Doi: 10.1016/j.wneu.2020.03.217.
Tags: 夏目 A03 - Motomura K, Takeuchi H, Nojima I, Aoki K, Chalise L, Iijima K, Wakabayashi T, Natsume A*. Navigated repetitive transcranial magnetic stimulation as preoperative assessment in patients with brain tumors. Sci Rep, 10, 9044, 2020.
Doi: 10.1038/s41598-020-65944-8.
Tags: 夏目 A03 - Nakazawa T, Murakami T, Natsume A, Nishimura F, Morimoto T, Matsuda R, Nakamura M, Yamada S, Nakagawa I, Park YS, Motoyama Y, Tsujimura T, Wakabayashi T, Nakase H. KHYG-1 Cells With EGFRvIII-specific CAR Induced a Pseudoprogression-like Feature in Subcutaneous Tumours Derived from Glioblastoma-like Cells. Anticancer Res, 40, 3231-7, 2020.
Doi: 10.21873/anticanres.14304.
Tags: 夏目 A03 - Sumi M, Nishikawa R, Narita Y, Muragaki Y, Maruyama T, Ito T, Beppu T, Nakamura H, Kayama T, Sato S, Nagane M, Mishima K, Nakasu Y, Kurisu K, Yamasaki F, Sugiyama K, Onishi T, Iwadate Y, Terasaki M, Kobayashi H, Matsumura A, Ishikawa E, Sasaki H, Mukasa A, Matsuo T, Hirano H, Kumabe T, Shinoura N, Hashimoto N, Aoki T, Asai A, Abe T, Yoshino A, Arakawa Y, Asano K, Yoshimoto K, Shibui S, Okuno Y, Wakabayashi T, and Members of Japan Clinical Oncology Group Brain Tumor Study G. Genetic analysis in patients with newly diagnosed glioblastomas treated with interferon-beta plus temozolomide in comparison with temozolomide alone. J Neurooncol, 148, 17-27, 2020.
Doi: 10.1007/s11060-020-03505-9.
Tags: 夏目 A03 - Nakazawa T, Natsume A, Nishimura F, Morimoto T, Matsuda R, Nakamura M, Yamada S, Nakagawa I, Motoyama Y, Park YS, Tsujimura T, Wakabayashi T, Nakase H. Effect of CRISPR/Cas9-Mediated PD-1-Disrupted Primary Human Third-Generation CAR-T Cells Targeting EGFRvIII on In Vitro Human Glioblastoma Cell Growth. Cells, 9, 2020.
Doi: 10.3390/cells9040998.
Tags: 夏目 A03 - Araki Y, Uda K, Yokoyama K, Kanamori F, Mamiya T, Nishihori M, Izumi T, Tanahashi K, Sumitomo M, Okamoto S, Wakabayashi T, Natsume A. Surgical Designs of Revascularization for Moyamoya Disease: 15 Years of Experience in a Single Center. World Neurosurg, 139, e325-e34, 2020.
Doi: 10.1016/j.wneu.2020.03.217.
Tags: 夏目 A03 - Matsumura N, Natsume A, Maeda S, Aoki K, Yamazaki T, Nobusawa S, Yokoo H. Malignant transformation of a dysembryoplastic neuroepithelial tumor verified by a shared copy number gain of the tyrosine kinase domain of FGFR1. Brain Tumor Pathol, 37, 69-75, 2020.
Doi: 10.1007/s10014-020-00361-3.
Tags: 夏目 A03 - Kanamori M, Takami H, Yamaguchi S, Sasayama T, Yoshimoto K, Tominaga T, Inoue A, Ikeda N, Kambe A, Kumabe T, Matsuda M, Tanaka S, Natsumeda M, Matsuda KI, Nonaka M, Kurihara J, Yamaoka M, Kagawa N, Shinojima N, Negoto T, Nakahara Y, Arakawa Y, Hatazaki S, Shimizu H, Yoshino A, Abe H, Akimoto J, Kawanishi Y, Suzuki T, Natsume A, Nagane M, Akiyama Y, Keino D, Fukami T, Tomita T, Kanaya K, Tokuyama T, Izumoto S, Nakada M, Kuga D, Yamamoto S, Anei R, Uzuka T, Fukai J, Kijima N, Terashima K, Ichimura K, Nishikawa R. So-called bifocal tumors with diabetes insipidus and negative tumor markers: are they all germinoma?. Neuro Oncol, 23, 295-303, 2021.
Doi: 10.1093/neuonc/noaa199.
Tags: 夏目 A03 - Motomura K, Chalise L, Shimizu H, Yamaguchi J, Nishikawa T, Ohka F, Aoki K, Tanahashi K, Hirano M, Wakabayashi T, Natsume A. Intraoperative seizure outcome of levetiracetam combined with perampanel therapy in patients with glioma undergoing awake brain surgery. J Neurosurg, 1-10, 2021.
Doi: 10.3171/2020.8.JNS201400.
Tags: 夏目 A03 - Shimizu H, Motomura K, Ohka F, Aoki K, Tanahashi K, Hirano M ,Chalise L, Nishikawa T, Yamaguchi J, Wakabayashi T, Natsume A. Multiple metastases to the bone and bone marrow from a 1p/19q-codeleted and IDH2-mutant anaplastic oligodendroglioma: a case report and literature review, Neurooncol Adv, 2, vdaa101, 2020 Akahori S, Nishimura Y, Eguchi K, Nagashima Y, Ando R, Awaya T, Hara M ,Natsume A. Spontaneous Rupture of a Huge Presacral Tarlov Cyst Leading to Dramatic Neurologic Recovery. World Neurosurg, 145, 306-10, 2021.
Doi: 10.1016/j.wneu.2020.09.098.
Tags: 夏目 A03 - Awaya T, Nishimura Y, Eguchi K, Nagashima Y, Ando R, Akahori S, Yoshikawa S, Haimoto S, Hara M, Natsume A. Preoperative Intracranial Dissemination of Spinal Myxopapillary Ependymoma Attributed to Tumor Hemorrhage, World Neurosurg, 145, 13-8, 2021.
Doi: 10.1016/j.wneu.2020.08.169.
Tags: 夏目 A03 - Ishikawa T, Takeuchi K, Yamamoto T, Nagata Y, Natsume A. Importance of Hydrostatic Pressure and Irrigation for Hemostasis in Neuroendoscopic Surgery. Neurol Med Chir (Tokyo), 61, 117-23, 2021.
Doi: 10.3171/2020.8.JNS201400.
Tags: 夏目 A03 - Naito Y, Aburatani H, Amano T, Baba E, Furukawa T, Hayashida T, Hiyama E, Ikeda S, Kanai M, Kato M, Kinoshita I, Kiyota N, Kohno T, Kohsaka S, Komine K, Matsumura I, Miura Y, Nakamura Y, Natsume A, Nishio K, Oda K, Oda N, Okita N, Oseto K, Sunami K, Takahashi H, Takeda M, Tashiro S, Toyooka S, Ueno H, Yachida S, Yoshino T, Tsuchihara K, Japanese Society of Medical O Japan Society of Clinical O Japanese Cancer A. Clinical practice guidance for next-generation sequencing in cancer diagnosis and treatment (edition 2.1). Int J Clin Oncol, 26, 233-83, 2021.
Doi: 10.1007/s10147-020-01831-6.
Tags: 夏目 A03 - Kitano Y, Aoki K, Ohka F, Yamazaki S, Motomura K, Tanahashi K, Hirano M, Naganawa T, Iida M, Shiraki Y, Nishikawa T, Shimizu H, Yamaguchi J, Maeda S, Suzuki H, Wakabayashi T, Baba Y, Yasui T, Natsume A. Urinary MicroRNA-Based Diagnostic Model for Central Nervous System Tumors Using Nanowire Scaffolds. ACS Appl Mater Interfaces, 13, 17316-29, 2021.
Doi: 10.1021/acsami.1c01754.
Tags: 夏目 A03 - Terasawa Y, Motomura K, Natsume A, Iijima K, Chalise L, Sugiura J, Yamamoto H, Koyama K, Wakabayashi T, Umeda S. Effects of insular resection on interactions between cardiac interoception and emotion recognition. Cortex, 137, 271-81, 2021. Doi: 10.1016/j.cortex.2021.
Tags: 夏目 A03 - Kanamori F, Araki Y, Yokoyama K, Uda K, Mamiya T, Nishihori M, Izumi T, Okamoto S, Natsume A. Effects of aspirin and heparin treatment on perioperative outcomes in patients with Moyamoya disease. Acta Neurochir (Wien). 163, 1485-91, 2021.
Doi: 10.1007/s00701-020-04668-0.
Tags: 夏目 A03 - Tomomasa R, Arai Y, Kawabata-Iwakawa R, Fukuoka K, Nakano Y, Hama N Nakata S, Suzuki N, Ishi Y, Tanaka S, Takahashi JA, Yuba Y, Shiota M, Natsume A, Kurimoto M, Shiba Y, Aoki M, Nabeshima K, Enomoto T, Inoue T, Fujimura J, Kondo A, Yao T, Okura N, Hirose T, Sasaki A, Nishiyama M, Ichimura K, Shibata T, Hirato J, Yokoo H, Nobusawa S. Ependymoma-like tumor with mesenchymal differentiation harboring C11orf95-NCOA1/2 or -RELA fusion: A hitherto unclassified tumor related to ependymoma. Brain Pathol. 31, e12943, 2021.
Doi: 10.1111/bpa.12943.
Tags: 夏目 A03 - Nishida Y, Ikuta K, Natsume A, Ishihara N, Morikawa M, Kidokoro H, Muramatsu Y, anbe M, Mizuno S, Imagama S, Ozaki N. Establishment of in-hospital clinical network for patients with neurofibromatosis type 1 in Nagoya University Hospital. Sci Rep, 11(1), 11933, 2021.
Doi: 10.1038/s41598-021-91345-6.
Tags: 夏目 A03 - Aoki K, Suzuki H, Yamamoto T, Yamamoto KN, Maeda S, Okuno Y, Ranjit M, Motomura K, Ohka F, Tanahashi K, Hirano M, Nishikawa T, Shimizu H, Kitano Y, Yamaguchi J, Yamazaki S, Nakamura H, Takahashi M, Narita Y, Nakada M, Deguchi S, Mizoguchi M, Momii Y, Muragaki Y, Abe T, Akimoto J, Wakabayashi T, Saito R, Ogawa S, Haeno H, Natsume A. Mathematical Modeling and Mutational Analysis Reveal Optimal Therapy to Prevent Malignant Transformation in Grade II IDH-Mutant Gliomas. Cancer Res, 81(18), 4861-4873, 2021.
Doi: 10.1158/0008-5472.
Tags: 夏目 A03 - Ohkawa Y, Zhang P, Momota H, Kato A, Hashimoto N, Ohmi Y, Bhuiyan RH, Farhana Y, Natsume A, Wakabayashi T, Furukawa K, Furukawa K. Lack of GD3 synthase (St8sia1) attenuates malignant properties of gliomas in genetically engineered mouse model. Cancer Sci, 112(9), 3756-3768, 2021.
Doi: 10.1111/cas.15032.
Tags: 夏目 A03 - Kanamori F, Yokoyama K, Ota A, Yoshikawa K, Karnan S, Maruwaka M, Shimizu K, Ota S, Uda K, Araki Y, Okamoto S, Maesawa S, Wakabayashi T, Natsume A. Transcriptome-wide analysis of intracranial artery in patients with moyamoya disease showing upregulation of immune response, and downregulation of oxidative phosphorylation and DNA repair. Neurosurg Focus, 51(3), E3, 2021.
Doi: 10.3171/2021.6.FOCUS20870.
Tags: 夏目 A03 -
Araki Y, Yokoyama K, Uda K, Kanamori F, Kurimoto M, Shiba Y, Mamiya T, Nishihori M, Izumi T, Sumitomo M, Okamoto S, Matsui K, Emoto R, Wakabayashi T, Matsui S, Natsume A. Postoperative stroke and neurological outcomes in the early phase after revascularization surgeries for moyamoya disease: an age-stratified comparative analysis. Neurosurg Rev, 44(5), 2785-2795, 2021.
Doi: 10.1007/s10143-020-01459-0.
Tags: 夏目 A03 - Yamazaki S, Ohka F, Hirano M, Shiraki Y, Motomura K, Tanahashi K, Tsujiuchi T, Motomura A, Aoki K, Shinjo K, Murofushi Y, Kitano Y, Maeda S, Kato A, Shimizu H, Yamaguchi J, Adilijiang A, Wakabayashi T, Saito R, Enomoto A, Kondo Y, Natsume A. Newly Established Patient-derived Organoid Model of Intracranial Meningioma. Neuro Oncol, 23(11), 1936-1948, 2021.
Doi: 10.1093/neuonc/noab155.
Tags: 夏目 A03 - Ferdinandus, Madoka Suzuki, Cong Vu, Yoshie Harada, Satya Ranjan Sarker, Shin’ichi Ishiwata, Tetsuya Kitaguchi, Satoshi Arai, Modulation of Local Cellular Activities using a Photothermal Dye-Based Subcellular-Sized Heat Spot, ACS Nano (in press, 2022).
DOI: 10.1021/acsnano.2c00285
Tags: 新井 A03 - Shohei Uchinomiya, Naoya Matsunaga, Koichiro Kamoda, Ryosuke Kawagoe, Akito Tsuruta, Shigehiro Ohdo, Akio Ojida, Fluorescence detection of metabolic activity of the fatty acid beta oxidation pathway in living cells, Commun, 56, 3023 – 3026 (2020)
DOI: 10.1039/C9CC09993J
Tags: 王子田 A01 - Mami Sato, Hirokazu Fuchida, Naoya Shindo, Keiko Kuwata, Keisuke Tokunaga, Guo Xiao-Lin, Ryo Inamori, Keitaro Hosokawa, Kosuke Watari, Tomohiro Shibata, Naoya Matsunaga, Satoru Koyanagi, Shigehiro Ohdo, Mayumi Ono, Akio Ojida, Selective Covalent Targeting of Mutated EGFR(T790M) with Chlorofluoroacetamide-Pyrimidines, ACS Medicinal Chemistry Letters, 11, 1137-1144 (2020).
DOI:10.1021/acsmedchemlett.9b00574
Tags: 王子田 A01 - Nattha Yongwattana, Nutsara Mekjinda, Wannee Thepsing, Supasara Ounsuk, Pravit Wongkongkatep, Tulyapruek Tawonsawatruk, Itaru Hamachi, Akio Ojida, Jirarut Wongkongkatep, Fluorescence Determination of Soluble Pyrophosphate Levels in Synovial Fluid as a Marker of Pseudogout Using Middle Point of Quantification Concept and Molecular Sensor,ScienceAsia, 46S, 36-42 (2020).
DOI:10.2306/scienceasia1513-1874.2020.S005Tags: 王子田 A01
- Noriaki Nakamura, Shohei Uchinomiya, Kazuya Inoue, Akio Ojida, Trimethyl-Substituted Carbamate as a Versatile Self-Immolative Linker for Fluorescence Detection of Enzyme Reactions,Molecules, 25, 2153 (2020).
DOI:10.3390/molecules25092153.
Tags: 王子田 A01 - Chizuru Miura, Naoya Shindo, Kei Okamoto, Tomoyo Osawa, Akio Ojida, Fragment-Based Discovery of Irreversible Covalent Inhibitors of Cysteine Proteases Using Chlorofluoro acetamide Library, Pharm. Bull., 68(11), 1074-1081(2020).
DOI: 10.1248/cpb.c20-00547
Tags: 王子田 A01 - Keisuke Tokunaga, Mami Sato, Keiko Kuwata, Chizuru Miura, Hirokazu Fuchida, Naoya Matsunaga, Satoru Koyanagi, Shigehiro Ohdo, Naoya Shindo, and Akio Ojida, Bicyclobutane Carboxylic Amide as a Cysteine-Directed Strained Electrophile for Selective Targeting of Proteins, Am. Chem. Soc., 142, 43, 18522–18531 (2020).
DOI: 10.1021/jacs.0c07490
Tags: 王子田 A01 - Anna Kanegae,Yusuke Takata, Ippei Takashima, Shohei Uchinomiya, Ryosuke Kawagoe, Kazuteru Usui, Akira Yamashita, Jirarut Wongkongkatep, Manabu Sugimoto, Akio Ojida , A multicolor and ratiometric fluorescent sensing platform for metal ions based on arene–metal-ion contact,Communications chemistry, 4:104 (2021).
DOI: 10.1038/s42004-021-00541-y
Tags: 王子田 A01 - Daiki Yamane, Satsuki Onitsuka, Suyong Re, Hikaru Isogai, Rui Hamada, Tadanari Hiramoto, Eiji Kawanishi, Kenji Mizuguchi, Naoya Shindo, Akio Ojida, Selective covalent targeting of SARS-CoV-2 main protease by enantiopure chlorofluoroacetamide, Chemical Science, 13, 3027-3034 (2022), DOI:1039/D1SC06596C
Tags: 王子田 A01
DOI: 10.1039/D1SC06596C